Variant report

Variant	rs573252466
Chromosome Location	chr6:119044259-119044260
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119029491..119033540-chr6:119042019..119045590,4	K562	blood:
2	chr6:119042570..119044815-chr6:119050294..119053179,2	K562	blood:

Variant related genes	Relation type
ENSG00000111860	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
11	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
13	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
14	nsv830788	chr6:119014021-119143652	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv1023826	chr6:119026481-119221408	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	nsv464030	chr6:119043898-119080379	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv470855	chr6:119043898-119080379	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv604560	chr6:119043898-119080379	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119031600-119044400	Weak transcription	Fetal Heart	heart
2	chr6:119031600-119045600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:119039000-119045000	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr6:119039000-119045000	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr6:119039000-119046000	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:119039400-119048600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:119041000-119045600	Weak transcription	Fetal Lung	lung
8	chr6:119041200-119045600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:119041200-119045600	Weak transcription	K562	blood
10	chr6:119041200-119048200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr6:119042000-119044400	Weak transcription	GM12878-XiMat	blood
12	chr6:119042200-119045600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:119042200-119046800	Weak transcription	Thymus	Thymus
14	chr6:119042400-119048200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:119043000-119044400	Weak transcription	Left Ventricle	heart
16	chr6:119043000-119045600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:119043000-119046600	Weak transcription	Fetal Thymus	thymus
18	chr6:119043000-119047000	Weak transcription	Dnd41	blood
19	chr6:119043200-119044800	Weak transcription	Primary B cells from cord blood	blood
20	chr6:119043400-119044400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:119043400-119044600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:119043600-119044400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:119043600-119044400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:119043600-119044600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:119043600-119044600	Enhancers	Osteobl	bone
26	chr6:119043600-119045200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:119043800-119044400	Enhancers	NHDF-Ad	bronchial
28	chr6:119043800-119044800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:119043800-119046600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr6:119043800-119046800	Weak transcription	Primary T cells from cord blood	blood
31	chr6:119044000-119044800	Enhancers	HMEC	breast
32	chr6:119044000-119044800	Enhancers	NH-A	brain
33	chr6:119044200-119044600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:119044200-119044600	Enhancers	Spleen	Spleen
35	chr6:119044200-119044600	Enhancers	NHEK	skin
36	chr6:119044200-119044800	Enhancers	Fetal Muscle Leg	muscle
37	chr6:119044200-119044800	Enhancers	Right Atrium	heart
38	chr6:119044200-119044800	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr6:119044200-119045800	Enhancers	Psoas Muscle	Psoas
40	chr6:119044200-119048400	Enhancers	Primary T helper cells fromperipheralblood	blood

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