Variant report
| Variant | rs573273597 |
|---|---|
| Chromosome Location | chr3:20995693-20995694 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-KAT2B-9 | chr3:20995660-20995726 | NONHSAT088631 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999025 | chr3:20738244-21042249 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv834629 | chr3:20878902-21057592 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv876606 | chr3:20957851-21049235 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv876607 | chr3:20972475-21087219 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 5 | nsv508211 | chr3:20973371-21025544 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 6 | nsv963510 | chr3:20986272-21001315 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 7 | esv3463272 | chr3:20988257-20996281 | Inactive region | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 8 | esv3463273 | chr3:20988338-20996262 | Inactive region | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 9 | esv3463274 | chr3:20988434-20996180 | Inactive region | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
