Variant report

Variant	rs57329980
Chromosome Location	chr1:165597204-165597205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2433132	1.00[ASN][1000 genomes]
rs34297214	1.00[ASN][1000 genomes]
rs4314865	1.00[ASN][1000 genomes]
rs55977919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56923458	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57035146	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58435034	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60806351	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681	1.00[ASN][1000 genomes]
rs6700316	1.00[ASN][1000 genomes]
rs72698040	1.00[ASN][1000 genomes]
rs9333370	1.00[ASN][1000 genomes]
rs9333372	1.00[ASN][1000 genomes]
rs9333379	1.00[ASN][1000 genomes]
rs9333470	1.00[ASN][1000 genomes]
rs9333475	1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165594000-165599000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:165595200-165599000	Enhancers	K562	blood
3	chr1:165595600-165598600	Weak transcription	Fetal Brain Female	brain
4	chr1:165596000-165599400	Enhancers	Fetal Intestine Small	intestine
5	chr1:165596400-165599400	Enhancers	Fetal Intestine Large	intestine
6	chr1:165597000-165598000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr1:165597200-165597400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:165597200-165599200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:165597200-165599200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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