Variant report

Variant	rs573323095
Chromosome Location	chr2:55348034-55348035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:55347589..55350399-chr2:55353012..55356550,3	K562	blood:
2	chr2:55273963..55277742-chr2:55344682..55351127,9	K562	blood:
3	chr2:55346562..55348270-chr2:55453778..55456492,2	K562	blood:
4	chr2:55325626..55328074-chr2:55345685..55348277,2	K562	blood:
5	chr2:55339781..55342552-chr2:55346442..55349594,4	K562	blood:
6	chr2:55347566..55351333-chr2:55355556..55357913,4	K562	blood:
7	chr2:55274620..55276240-chr2:55348004..55351084,3	K562	blood:
8	chr2:55255186..55258524-chr2:55346221..55348339,3	K562	blood:
9	chr2:55276893..55279420-chr2:55345173..55348059,4	K562	blood:
10	chr2:55347650..55349740-chr2:55350733..55352941,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522772	chr2:55347472-55349726	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55337200-55351000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:55339400-55351000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:55342400-55350200	Enhancers	Fetal Heart	heart
4	chr2:55344400-55350200	Enhancers	Brain Cingulate Gyrus	brain
5	chr2:55344400-55350600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr2:55344600-55348600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:55344600-55350000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:55345200-55349000	Enhancers	Primary hematopoietic stem cells	blood
9	chr2:55345400-55350200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:55345400-55350200	Enhancers	Brain Angular Gyrus	brain
11	chr2:55345600-55348200	Enhancers	Primary B cells from cord blood	blood
12	chr2:55345600-55348200	Enhancers	Primary B cells from peripheral blood	blood
13	chr2:55345600-55348400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:55345600-55350200	Enhancers	Brain Germinal Matrix	brain
15	chr2:55345600-55350200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr2:55345600-55350400	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr2:55345800-55348400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr2:55345800-55348400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:55345800-55348400	Enhancers	Fetal Thymus	thymus
20	chr2:55345800-55348600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr2:55345800-55348600	Enhancers	Adipose Nuclei	Adipose
22	chr2:55345800-55348800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:55345800-55348800	Enhancers	NHDF-Ad	bronchial
24	chr2:55345800-55349000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr2:55346000-55348200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr2:55346000-55351600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr2:55346200-55350000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr2:55346400-55348600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr2:55346400-55349600	Weak transcription	HUVEC	blood vessel
30	chr2:55346600-55348600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr2:55346600-55350800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr2:55346800-55348400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:55346800-55348400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr2:55346800-55348400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr2:55346800-55348400	Enhancers	Fetal Lung	lung
36	chr2:55346800-55348400	Enhancers	Placenta	Placenta
37	chr2:55346800-55348400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr2:55346800-55348600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr2:55346800-55348600	Enhancers	NHLF	lung
40	chr2:55346800-55349200	Enhancers	Fetal Stomach	stomach
41	chr2:55346800-55350200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr2:55347000-55348200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr2:55347000-55348200	Enhancers	Duodenum Mucosa	Duodenum
44	chr2:55347000-55348200	Enhancers	Stomach Mucosa	stomach
45	chr2:55347000-55348400	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr2:55347000-55348400	Enhancers	Ovary	ovary
47	chr2:55347000-55348400	Enhancers	Psoas Muscle	Psoas
48	chr2:55347200-55348200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr2:55347200-55348200	Flanking Active TSS	Stomach Smooth Muscle	stomach
50	chr2:55347200-55348400	Enhancers	Fetal Intestine Large	intestine

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