Variant report

Variant	rs573326203
Chromosome Location	chr18:43558343-43558344
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2277	chr18:43543715-43588579	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv817792	chr18:43556952-43561238	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv1064882	chr18:43558343-43687674	Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv543693	chr18:43558343-43687674	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43548000-43567000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:43548200-43562800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr18:43554200-43567200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr18:43554400-43566200	Weak transcription	Liver	Liver
5	chr18:43554600-43558800	Weak transcription	Primary B cells from cord blood	blood
6	chr18:43554600-43560000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr18:43554600-43560000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr18:43554600-43560000	Weak transcription	Fetal Heart	heart
9	chr18:43554600-43560000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr18:43554600-43560000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr18:43554600-43562600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr18:43554600-43563000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr18:43554600-43566200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr18:43554600-43566800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr18:43554600-43567400	Weak transcription	Adipose Nuclei	Adipose
16	chr18:43554600-43567800	Weak transcription	Primary T cells from cord blood	blood
17	chr18:43554600-43567800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr18:43554600-43568000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr18:43554600-43568800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr18:43554600-43571400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr18:43555000-43562600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr18:43557200-43558800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr18:43557200-43558800	Enhancers	Pancreas	Pancrea
24	chr18:43557200-43567200	Weak transcription	Osteobl	bone
25	chr18:43557200-43573400	Weak transcription	NHLF	lung
26	chr18:43557400-43558600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr18:43557400-43558600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr18:43557400-43558600	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr18:43557400-43558600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr18:43557400-43558600	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr18:43557400-43560000	Weak transcription	K562	blood
32	chr18:43557400-43567200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr18:43557400-43567200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr18:43557600-43558600	Enhancers	H9 Cell Line	embryonic stem cell
35	chr18:43557600-43559800	Weak transcription	Left Ventricle	heart
36	chr18:43557600-43561800	Weak transcription	HUVEC	blood vessel
37	chr18:43557800-43558400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr18:43557800-43567000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr18:43558200-43558400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr18:43558200-43558400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr18:43558200-43558400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr18:43558200-43558600	Enhancers	H1 Cell Line	embryonic stem cell
43	chr18:43558200-43558600	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr18:43558200-43558600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr18:43558200-43558600	Enhancers	Monocytes-CD14+_RO01746	blood

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