Variant report

Variant	rs573337889
Chromosome Location	chr4:119544302-119544303
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1002771	chr4:119125361-119571237	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv427693	chr4:119493919-119674742	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv980251	chr4:119510579-119563981	Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1824927	chr4:119521936-119577466	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv966369	chr4:119539088-119559938	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv1822873	chr4:119542500-119577466	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119513400-119551400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:119513400-119554000	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:119513400-119554800	Weak transcription	Ovary	ovary
4	chr4:119513400-119557200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:119513600-119549200	Weak transcription	Esophagus	oesophagus
6	chr4:119513600-119550400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:119513600-119551000	Weak transcription	Pancreas	Pancrea
8	chr4:119513600-119551600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:119513600-119552400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:119513600-119552400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:119513600-119552400	Weak transcription	Fetal Brain Female	brain
12	chr4:119513600-119552400	Weak transcription	Lung	lung
13	chr4:119513600-119552400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr4:119513600-119554000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:119513600-119555800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:119513600-119559200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:119513800-119551200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr4:119513800-119552400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:119513800-119555000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr4:119513800-119556000	Weak transcription	Fetal Lung	lung
21	chr4:119518400-119552600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:119518800-119557000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:119519000-119549600	Weak transcription	Brain Anterior Caudate	brain
24	chr4:119519400-119552400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr4:119519600-119551200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr4:119519600-119552400	Weak transcription	Brain Angular Gyrus	brain
27	chr4:119519800-119552600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr4:119519800-119559000	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:119520400-119551200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr4:119520600-119549200	Weak transcription	Spleen	Spleen
31	chr4:119520600-119550400	Weak transcription	Gastric	stomach
32	chr4:119520600-119550400	Weak transcription	Thymus	Thymus
33	chr4:119520600-119552200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:119520600-119552200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:119520600-119552400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr4:119520800-119551000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr4:119520800-119552200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr4:119520800-119552400	Weak transcription	Right Ventricle	heart
39	chr4:119521000-119550000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr4:119521000-119550400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr4:119521000-119550400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:119521200-119550200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr4:119521200-119551200	Weak transcription	Adipose Nuclei	Adipose
44	chr4:119521200-119551600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr4:119521200-119552400	Weak transcription	Placenta	Placenta
46	chr4:119522600-119551600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr4:119526000-119556200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr4:119527200-119552200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr4:119527400-119550200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr4:119527400-119550400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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