Variant report

Variant	rs573342137
Chromosome Location	chr17:16936222-16936223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16913150..16913949-chr17:16935742..16936397,2	MCF-7	breast:
2	chr17:16931293..16933179-chr17:16934223..16937186,2	MCF-7	breast:
3	chr17:16931573..16934044-chr17:16934220..16938314,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv907727	chr17:16892265-16938582	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv543231	chr17:16926227-16950644	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv978376	chr17:16934418-16938973	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16930400-16936600	Enhancers	Fetal Muscle Trunk	muscle
2	chr17:16930600-16937600	Enhancers	HSMMtube	muscle
3	chr17:16931600-16936400	Enhancers	Fetal Lung	lung
4	chr17:16932200-16939800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr17:16932400-16940600	Enhancers	HSMM	muscle
6	chr17:16932800-16944200	Weak transcription	Fetal Brain Female	brain
7	chr17:16933200-16936400	Enhancers	Brain Hippocampus Middle	brain
8	chr17:16933200-16936600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr17:16933200-16936800	Weak transcription	Fetal Thymus	thymus
10	chr17:16933800-16936800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr17:16934000-16936400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr17:16934200-16936400	Enhancers	Osteobl	bone
13	chr17:16934200-16937800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr17:16934400-16936400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr17:16934400-16937400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr17:16934600-16936800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr17:16934600-16944600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr17:16935000-16936600	Enhancers	Right Ventricle	heart
19	chr17:16935200-16936400	Enhancers	K562	blood
20	chr17:16935200-16940800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr17:16935400-16941200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr17:16935600-16937800	Weak transcription	Fetal Kidney	kidney
23	chr17:16935600-16944400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr17:16935800-16936800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr17:16935800-16945200	Weak transcription	Aorta	Aorta
26	chr17:16936000-16937000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr17:16936000-16937000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr17:16936000-16937000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr17:16936000-16937200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr17:16936000-16938800	Weak transcription	Left Ventricle	heart
31	chr17:16936000-16938800	Weak transcription	Psoas Muscle	Psoas
32	chr17:16936000-16938800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr17:16936000-16938800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr17:16936000-16939000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr17:16936000-16939000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr17:16936000-16939200	Weak transcription	Placenta	Placenta
37	chr17:16936000-16939800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr17:16936000-16939800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr17:16936000-16939800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr17:16936000-16939800	Weak transcription	Spleen	Spleen
41	chr17:16936000-16940000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr17:16936000-16940000	Weak transcription	Lung	lung
43	chr17:16936000-16940000	Weak transcription	Right Atrium	heart
44	chr17:16936000-16940000	Weak transcription	NHLF	lung
45	chr17:16936000-16940200	Weak transcription	Pancreas	Pancrea
46	chr17:16936000-16942000	Weak transcription	Fetal Intestine Large	intestine
47	chr17:16936000-16943200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr17:16936000-16943400	Weak transcription	Fetal Brain Male	brain
49	chr17:16936000-16944200	Weak transcription	Duodenum Mucosa	Duodenum
50	chr17:16936000-16944400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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