Variant report

Variant	rs573388085
Chromosome Location	chr4:120586800-120586801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1010753	chr4:120429028-120684310	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537233	chr4:120429028-120684310	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1006572	chr4:120432494-120694243	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1802546	chr4:120558608-120675026	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1010638	chr4:120586178-120671835	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120577600-120605000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:120578800-120588000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:120578800-120592800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:120583600-120587800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:120585200-120587200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:120585200-120587400	Weak transcription	Fetal Stomach	stomach
7	chr4:120585200-120587600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:120585200-120587800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:120585400-120588000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:120585600-120589000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:120585600-120589600	Enhancers	Colon Smooth Muscle	Colon
12	chr4:120585800-120588000	Weak transcription	NHLF	lung
13	chr4:120585800-120589000	Weak transcription	Fetal Lung	lung
14	chr4:120586000-120587400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:120586000-120588000	Weak transcription	Aorta	Aorta
16	chr4:120586000-120588200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:120586000-120589000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:120586000-120589400	Enhancers	Rectal Smooth Muscle	rectum
19	chr4:120586200-120587800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:120586200-120587800	Weak transcription	Osteobl	bone
21	chr4:120586200-120589600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:120586400-120592600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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