Variant report

Variant	rs573392870
Chromosome Location	chr14:105399062-105399063
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105393329..105396153-chr14:105398779..105401055,3	MCF-7	breast:
2	chr14:105397847..105399946-chr14:105442912..105445708,2	MCF-7	breast:
3	chr14:105398736..105403202-chr14:105431579..105436953,6	MCF-7	breast:
4	chr14:105398840..105402135-chr14:105423492..105426295,4	MCF-7	breast:
5	chr14:105397107..105399280-chr14:105419920..105422847,2	MCF-7	breast:
6	chr14:105284508..105286639-chr14:105398983..105401312,2	MCF-7	breast:
7	chr14:105331442..105333912-chr14:105397463..105399152,2	MCF-7	breast:
8	chr14:105380860..105383186-chr14:105398917..105400427,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185567	Chromatin interaction
ENSG00000099814	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053591	chr14:105024558-105475931	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv542224	chr14:105024558-105475931	Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
4	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
5	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
6	nsv456456	chr14:105285159-105412541	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv566099	chr14:105285159-105412541	Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
9	nsv566139	chr14:105347296-105417147	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv902419	chr14:105381763-105494262	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
11	nsv1049253	chr14:105384959-105471855	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
12	nsv542228	chr14:105390569-105459912	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
13	esv3322061	chr14:105398932-105401780	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105394200-105399200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:105395800-105399200	Weak transcription	Esophagus	oesophagus
3	chr14:105397600-105399200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr14:105397800-105399800	Active TSS	Rectal Smooth Muscle	rectum
5	chr14:105398200-105399200	Enhancers	Pancreas	Pancrea
6	chr14:105398200-105399600	Bivalent Enhancer	Fetal Brain Male	brain
7	chr14:105398200-105399600	Enhancers	Spleen	Spleen
8	chr14:105398200-105399800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr14:105398200-105399800	Enhancers	Fetal Heart	heart
10	chr14:105398400-105399200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr14:105398400-105399200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:105398400-105399200	Flanking Active TSS	Right Ventricle	heart
13	chr14:105398400-105399400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:105398400-105399400	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
15	chr14:105398400-105399400	Flanking Active TSS	Stomach Smooth Muscle	stomach
16	chr14:105398400-105399600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
17	chr14:105398400-105399800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
18	chr14:105398400-105399800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr14:105398400-105399800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr14:105398400-105399800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:105398400-105400000	Bivalent/Poised TSS	Osteobl	bone
22	chr14:105398400-105400800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
23	chr14:105398600-105399200	Enhancers	Lung	lung
24	chr14:105398600-105399400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr14:105398800-105399200	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr14:105398800-105399200	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
27	chr14:105398800-105399200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
28	chr14:105398800-105399200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
29	chr14:105398800-105399200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
30	chr14:105398800-105399400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr14:105398800-105399400	Bivalent Enhancer	Fetal Lung	lung
32	chr14:105398800-105399600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:105398800-105399600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr14:105398800-105399600	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr14:105398800-105399600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
36	chr14:105398800-105399800	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:105398800-105399800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
38	chr14:105398800-105399800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:105398800-105399800	Active TSS	Colon Smooth Muscle	Colon
40	chr14:105398800-105399800	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
41	chr14:105398800-105400600	Enhancers	Primary B cells from peripheral blood	blood
42	chr14:105398800-105400800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
43	chr14:105398800-105400800	Active TSS	Brain Angular Gyrus	brain
44	chr14:105399000-105399200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
45	chr14:105399000-105399200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr14:105399000-105399200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr14:105399000-105399200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
48	chr14:105399000-105399200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr14:105399000-105399200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr14:105399000-105399200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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