Variant report

Variant	rs573398528
Chromosome Location	chr11:46244419-46244420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46235668..46238517-chr11:46241557..46245176,4	K562	blood:
2	chr11:46243218..46244799-chr11:46411942..46414663,2	K562	blood:
3	chr11:46153781..46156284-chr11:46244392..46246290,2	K562	blood:
4	chr11:46241197..46245496-chr11:46256169..46258783,6	K562	blood:
5	chr11:46243733..46245784-chr11:46263716..46265600,2	K562	blood:
6	chr11:46243156..46245098-chr11:46255575..46258822,3	MCF-7	breast:
7	chr11:46240075..46247012-chr11:46255086..46262989,16	K562	blood:
8	chr11:46240364..46242725-chr11:46242954..46244645,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051344	chr11:46188818-46306447	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv541028	chr11:46188818-46306447	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
3	nsv308	chr11:46242287-46287542	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46243600-46244600	Enhancers	Brain Germinal Matrix	brain
2	chr11:46244200-46244600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:46244200-46244600	Enhancers	Brain Cingulate Gyrus	brain
4	chr11:46244200-46244600	Enhancers	Fetal Lung	lung
5	chr11:46244200-46244800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:46244200-46244800	Enhancers	Hela-S3	cervix
7	chr11:46244200-46245000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:46244400-46244600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:46244400-46244600	Flanking Active TSS	K562	blood
10	chr11:46244400-46245000	Enhancers	HepG2	liver
11	chr11:46244400-46245400	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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