Variant report

Variant	rs573399529
Chromosome Location	chr11:83852070-83852071
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3463509	chr11:83850358-83856029	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3463520	chr11:83850404-83856006	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3463497	chr11:83850425-83855976	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3463531	chr11:83850495-83855894	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83846600-83858200	Enhancers	Brain Hippocampus Middle	brain
2	chr11:83849400-83856400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:83850200-83853600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83851000-83852200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:83851200-83852600	Enhancers	Brain Anterior Caudate	brain
6	chr11:83851200-83852800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:83851400-83852200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr11:83851600-83852800	Enhancers	Brain Angular Gyrus	brain
9	chr11:83851600-83855200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:83851600-83856000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:83851800-83855800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:83851800-83856800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:83852000-83853200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:83852000-83853400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:83852000-83853400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:83852000-83853600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:83852000-83854600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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