Variant report

Variant	rs573400330
Chromosome Location	chr19:51479001-51479002
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:51474380..51475999-chr19:51476075..51479052,2	MCF-7	breast:
2	chr19:51432732..51437222-chr19:51477627..51480793,4	MCF-7	breast:
3	chr19:51470577..51472254-chr19:51478017..51480801,2	K562	blood:
4	chr19:51474799..51477178-chr19:51477869..51480485,2	MCF-7	breast:
5	chr19:51478311..51481235-chr19:51486537..51488716,3	MCF-7	breast:
6	chr19:51470577..51473158-chr19:51478017..51482058,3	K562	blood:

Variant related genes	Relation type
ENSG00000267879	Chromatin interaction
ENSG00000169035	Chromatin interaction
ENSG00000167755	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064207	chr19:51474525-51497278	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3440392	chr19:51477165-51480013	Enhancers Bivalent Enhancer Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3329302	chr19:51477315-51479788	Bivalent Enhancer Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3406716	chr19:51477740-51479638	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51472800-51482200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr19:51473000-51480600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:51473200-51480800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr19:51473200-51482400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:51474800-51482200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr19:51477400-51479200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr19:51477800-51479200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr19:51479000-51479400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr19:51479000-51479400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr19:51479000-51479400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr19:51479000-51479400	Bivalent Enhancer	A549	lung
12	chr19:51479000-51479600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr19:51479000-51479600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr19:51479000-51479600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr19:51479000-51479600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr19:51479000-51479600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr19:51479000-51479600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr19:51479000-51479600	Enhancers	Esophagus	oesophagus
19	chr19:51479000-51479600	Enhancers	NHEK	skin
20	chr19:51479000-51479800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr19:51479000-51480000	Enhancers	HMEC	breast

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