Variant report

Variant	rs573405557
Chromosome Location	chr7:127031543-127031544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:127028627..127034604-chr7:127290902..127294330,10	K562	blood:
2	chr7:127031057..127033330-chr7:127290561..127293507,3	MCF-7	breast:
3	chr7:126890989..126892929-chr7:127030143..127031828,2	K562	blood:
4	chr7:126891429..126894759-chr7:127030328..127033331,3	K562	blood:
5	chr7:127030999..127034277-chr7:127071570..127073569,4	K562	blood:
6	chr7:124568199..124570049-chr7:127030538..127032262,2	K562	blood:
7	chr7:127029421..127032644-chr7:127225849..127230043,4	K562	blood:
8	chr7:127011403..127015656-chr7:127030018..127033626,5	MCF-7	breast:
9	chr7:127029920..127034279-chr7:127291168..127294285,4	MCF-7	breast:
10	chr10:88818573..88820601-chr7:127031334..127033710,2	MCF-7	breast:
11	chr7:126985549..126992875-chr7:127029251..127034121,12	K562	blood:
12	chr7:127029926..127034103-chr7:127290516..127296284,10	K562	blood:
13	chr17:57914420..57916265-chr7:127031107..127033179,2	MCF-7	breast:
14	chr7:127030656..127034603-chr7:127225190..127230310,7	MCF-7	breast:
15	chr7:126892205..126895115-chr7:127030974..127032697,2	MCF-7	breast:
16	chr7:127030702..127032822-chr7:127225677..127228410,2	K562	blood:
17	chr7:126986612..126990415-chr7:127030676..127033732,5	MCF-7	breast:
18	chr7:126987100..126989492-chr7:127030062..127031935,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197157	Chromatin interaction
ENSG00000148672	Chromatin interaction
ENSG00000179603	Chromatin interaction
ENSG00000179562	Chromatin interaction
ENSG00000128513	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000224897	Chromatin interaction
ENSG00000004059	Chromatin interaction
ENSG00000240790	Chromatin interaction
ENSG00000224138	Chromatin interaction
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3373113	chr7:127030941-127033489	Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127023800-127031600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:127030200-127032000	Transcr. at gene 5' and 3'	Dnd41	blood
3	chr7:127030400-127031600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:127030400-127031800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:127030400-127031800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
6	chr7:127030600-127032000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:127030800-127033000	Active TSS	HMEC	breast
8	chr7:127030800-127033200	Active TSS	GM12878-XiMat	blood
9	chr7:127031000-127031600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:127031000-127031600	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr7:127031000-127031600	Flanking Active TSS	Osteobl	bone
12	chr7:127031000-127031800	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr7:127031000-127031800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr7:127031000-127031800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:127031000-127031800	Flanking Active TSS	HUVEC	blood vessel
16	chr7:127031000-127031800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr7:127031000-127033200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:127031000-127033200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
19	chr7:127031200-127031600	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:127031200-127031600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:127031200-127031600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:127031200-127031600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
23	chr7:127031200-127031600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr7:127031200-127031600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr7:127031200-127031600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr7:127031200-127031600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr7:127031200-127031600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr7:127031200-127031600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
29	chr7:127031200-127031600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr7:127031200-127031600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:127031200-127031600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:127031200-127031600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr7:127031200-127031600	Flanking Active TSS	Fetal Intestine Small	intestine
34	chr7:127031200-127031600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
35	chr7:127031200-127031600	Transcr. at gene 5' and 3'	K562	blood
36	chr7:127031200-127031600	Flanking Active TSS	NH-A	brain
37	chr7:127031200-127031600	Flanking Active TSS	NHDF-Ad	bronchial
38	chr7:127031200-127031600	Flanking Active TSS	NHLF	lung
39	chr7:127031200-127031800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
40	chr7:127031200-127031800	Flanking Active TSS	Primary hematopoietic stem cells	blood
41	chr7:127031200-127031800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr7:127031200-127031800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:127031200-127031800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:127031200-127031800	Flanking Active TSS	Liver	Liver
45	chr7:127031200-127031800	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr7:127031200-127031800	Flanking Active TSS	Brain Cingulate Gyrus	brain
47	chr7:127031200-127031800	Flanking Active TSS	Brain Substantia Nigra	brain
48	chr7:127031200-127031800	Flanking Active TSS	Duodenum Mucosa	Duodenum
49	chr7:127031200-127031800	Flanking Active TSS	Fetal Brain Female	brain
50	chr7:127031200-127031800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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