Variant report

Variant	rs573422895
Chromosome Location	chr1:95581772-95581773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
TMEM56-RWDD3	TF binding region
TMEM56	TF binding region
ENSG00000231992	TF binding region
ENSG00000122481	Chromatin interaction
ENSG00000271092	Chromatin interaction
ENSG00000226026	Chromatin interaction
ENSG00000206679	Chromatin interaction
ENSG00000172339	Chromatin interaction
ENSG00000117528	Chromatin interaction
ENSG00000152078	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3354291	chr1:95580964-95585362	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95581000-95582200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr1:95581000-95582400	Flanking Active TSS	K562	blood
3	chr1:95581200-95582000	Enhancers	Fetal Heart	heart
4	chr1:95581200-95582000	Enhancers	Hela-S3	cervix
5	chr1:95581200-95582200	Enhancers	Brain Anterior Caudate	brain
6	chr1:95581200-95582200	Enhancers	Fetal Intestine Large	intestine
7	chr1:95581200-95582200	Enhancers	Fetal Intestine Small	intestine
8	chr1:95581400-95581800	Enhancers	A549	lung
9	chr1:95581600-95582000	Enhancers	Brain Cingulate Gyrus	brain
10	chr1:95581600-95582000	Weak transcription	HMEC	breast
11	chr1:95581600-95582200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:95581600-95582200	Enhancers	Placenta	Placenta
13	chr1:95581600-95582400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:95581600-95582400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
15	chr1:95581600-95582400	Weak transcription	Esophagus	oesophagus
16	chr1:95581600-95582400	Flanking Active TSS	HepG2	liver
17	chr1:95581600-95582800	Flanking Active TSS	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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