Variant report

Variant	rs57346659
Chromosome Location	chr15:59774576-59774577
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72749162	1.00[AMR][1000 genomes]
rs72749173	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv904278	chr15:59705005-59784648	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59736800-59785000	Weak transcription	Fetal Brain Male	brain
2	chr15:59755800-59774800	Weak transcription	A549	lung
3	chr15:59760800-59778800	Weak transcription	Fetal Brain Female	brain
4	chr15:59766200-59776000	Weak transcription	Brain Angular Gyrus	brain
5	chr15:59767600-59785000	Weak transcription	Pancreas	Pancrea
6	chr15:59770200-59783000	Weak transcription	Brain Germinal Matrix	brain
7	chr15:59771800-59784400	Weak transcription	Hela-S3	cervix
8	chr15:59772600-59775800	Weak transcription	Fetal Heart	heart
9	chr15:59772800-59776800	Weak transcription	Left Ventricle	heart
10	chr15:59774200-59775200	Flanking Active TSS	GM12878-XiMat	blood
11	chr15:59774400-59775000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr15:59774400-59775000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:59774400-59775000	Enhancers	NHEK	skin
14	chr15:59774400-59775600	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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