Variant report

Variant	rs573474753
Chromosome Location	chr4:152603629-152603630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755535	chr4:152549395-152609395	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv4551	chr4:152582617-152627367	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1026511	chr4:152593382-152611915	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv996950	chr4:152603171-152603631	Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
5	esv14511	chr4:152603171-152603631	Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
6	esv14313	chr4:152603171-152607993	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152563800-152625200	Weak transcription	Hela-S3	cervix
2	chr4:152567400-152608600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:152567800-152609000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:152581200-152608400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:152585600-152628600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:152585800-152640400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:152586400-152609000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:152589200-152608800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr4:152589200-152619200	Weak transcription	Dnd41	blood
10	chr4:152590600-152609000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr4:152591200-152608600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:152591200-152646800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:152592200-152608000	Weak transcription	Thymus	Thymus
14	chr4:152592600-152636400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:152593600-152608000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:152593600-152608800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:152595200-152611600	Weak transcription	K562	blood
18	chr4:152595600-152608600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:152596200-152608600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:152596200-152624000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr4:152596400-152604400	Weak transcription	Pancreas	Pancrea
22	chr4:152596400-152608000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr4:152596400-152608000	Weak transcription	Ovary	ovary
24	chr4:152596400-152608600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr4:152596400-152608600	Weak transcription	Placenta	Placenta
26	chr4:152596400-152609000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr4:152596400-152627800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr4:152596400-152628600	Weak transcription	Colonic Mucosa	Colon
29	chr4:152596400-152640600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr4:152596600-152604600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:152596600-152605400	Weak transcription	Stomach Mucosa	stomach
32	chr4:152596600-152608000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr4:152596600-152608000	Weak transcription	Right Atrium	heart
34	chr4:152596600-152608600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr4:152596800-152606000	Weak transcription	Right Ventricle	heart
36	chr4:152596800-152606400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr4:152596800-152606400	Strong transcription	Primary T cells from cord blood	blood
38	chr4:152596800-152606400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr4:152596800-152607400	Weak transcription	Lung	lung
40	chr4:152596800-152607800	Weak transcription	Psoas Muscle	Psoas
41	chr4:152596800-152608000	Weak transcription	Fetal Lung	lung
42	chr4:152596800-152608800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr4:152597000-152604400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr4:152597000-152607200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr4:152597000-152608000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:152597000-152608200	Weak transcription	Brain Hippocampus Middle	brain
47	chr4:152597000-152608400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr4:152597000-152612000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr4:152597200-152604400	Weak transcription	Fetal Intestine Large	intestine
50	chr4:152597200-152608000	Weak transcription	Brain Angular Gyrus	brain

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