Variant report

Variant	rs57349641
Chromosome Location	chr3:112491975-112491976
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:112491625..112493260-chr3:112500816..112503806,2	MCF-7	breast:
2	chr3:112490402..112493050-chr3:112499007..112501789,2	K562	blood:
3	chr3:112490402..112493250-chr3:112496311..112501759,4	K562	blood:
4	chr3:112491264..112493086-chr3:112507198..112509342,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11916827	1.00[ASN][1000 genomes]
rs1249885	1.00[ASN][1000 genomes]
rs59048040	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59842034	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948419	1.00[ASN][1000 genomes]
rs72948422	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv877343	chr3:112470586-112597706	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112485800-112494400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:112486600-112492800	Weak transcription	Spleen	Spleen
3	chr3:112486600-112492800	Weak transcription	GM12878-XiMat	blood
4	chr3:112486600-112494000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:112487400-112492200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr3:112488000-112501200	Enhancers	NHLF	lung
7	chr3:112489200-112492200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:112489400-112492200	Weak transcription	HMEC	breast
9	chr3:112489400-112492600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:112489400-112492800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr3:112489400-112492800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:112489400-112492800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr3:112489400-112493000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:112489400-112493000	Weak transcription	HUVEC	blood vessel
15	chr3:112489600-112493000	Weak transcription	NH-A	brain
16	chr3:112490000-112492200	Weak transcription	NHEK	skin
17	chr3:112490000-112495200	Enhancers	Primary T cells fromperipheralblood	blood
18	chr3:112490000-112495200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:112490200-112492200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:112490200-112492200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:112490200-112492400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:112490200-112492800	Weak transcription	Osteobl	bone
23	chr3:112490200-112494800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:112490200-112495600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:112490200-112499800	Weak transcription	K562	blood
26	chr3:112491000-112493800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:112491000-112494800	Enhancers	Stomach Mucosa	stomach
28	chr3:112491200-112492000	Enhancers	Colon Smooth Muscle	Colon
29	chr3:112491200-112492000	Enhancers	Fetal Muscle Trunk	muscle
30	chr3:112491200-112492800	Enhancers	A549	lung
31	chr3:112491200-112494600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:112491200-112495200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr3:112491200-112495200	Enhancers	Hela-S3	cervix
34	chr3:112491200-112495600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr3:112491200-112499600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:112491200-112501200	Enhancers	NHDF-Ad	bronchial
37	chr3:112491400-112492400	Weak transcription	Primary B cells from cord blood	blood
38	chr3:112491400-112493600	Weak transcription	Right Atrium	heart
39	chr3:112491400-112494800	Enhancers	Fetal Muscle Leg	muscle
40	chr3:112491600-112492000	Enhancers	Duodenum Mucosa	Duodenum
41	chr3:112491600-112492200	Weak transcription	Fetal Stomach	stomach
42	chr3:112491600-112492800	Weak transcription	Adipose Nuclei	Adipose
43	chr3:112491600-112492800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr3:112491600-112493600	Weak transcription	Esophagus	oesophagus
45	chr3:112491600-112495200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr3:112491800-112492200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr3:112491800-112493000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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