Variant report

Variant	rs573502215
Chromosome Location	chr7:16413535-16413536
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16413371..16417158-chr7:16459644..16462038,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214960	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1022388	chr7:16251992-16431864	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2757215	chr7:16346139-16458474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv508447	chr7:16360614-16446053	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1031019	chr7:16377519-16458474	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1028556	chr7:16404615-16440024	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv523408	chr7:16413481-16438357	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16396000-16416000	Weak transcription	HSMMtube	muscle
2	chr7:16398000-16415400	Weak transcription	Left Ventricle	heart
3	chr7:16398000-16417400	Weak transcription	Gastric	stomach
4	chr7:16402200-16416000	Weak transcription	Liver	Liver
5	chr7:16403600-16415200	Weak transcription	Psoas Muscle	Psoas
6	chr7:16405000-16417400	Weak transcription	Right Ventricle	heart
7	chr7:16406000-16413600	Weak transcription	K562	blood
8	chr7:16407000-16414600	Weak transcription	Fetal Lung	lung
9	chr7:16410000-16414200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr7:16410000-16414400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:16410400-16414200	Weak transcription	Fetal Muscle Leg	muscle
12	chr7:16410600-16415000	Weak transcription	Pancreas	Pancrea
13	chr7:16410600-16415400	Weak transcription	Esophagus	oesophagus
14	chr7:16410800-16413800	Weak transcription	Aorta	Aorta
15	chr7:16410800-16415000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:16410800-16415600	Weak transcription	Lung	lung
17	chr7:16410800-16418200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:16412600-16414600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:16412600-16415600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:16412600-16427000	Weak transcription	Adipose Nuclei	Adipose
21	chr7:16413000-16413800	Strong transcription	Ovary	ovary
22	chr7:16413400-16413800	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links