Variant report

Variant	rs57350660
Chromosome Location	chr4:104089754-104089755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs60495707	1.00[EUR][1000 genomes]
rs61271514	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73835313	1.00[EUR][1000 genomes]
rs73837641	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73837648	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73837655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429917	chr4:103915319-104207455	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830021	chr4:103934454-104100588	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1015023	chr4:104039145-104565217	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv830022	chr4:104087199-104257784	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:104021200-104100200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:104038200-104095800	Strong transcription	Fetal Thymus	thymus
3	chr4:104051000-104092600	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:104058200-104118400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:104065000-104113200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:104070400-104091200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:104073600-104118400	Weak transcription	Fetal Kidney	kidney
8	chr4:104076800-104092000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:104078400-104108400	Strong transcription	Dnd41	blood
10	chr4:104080000-104101800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:104080400-104092000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr4:104086200-104092400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr4:104086600-104092400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:104087400-104092200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr4:104087800-104092400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:104088600-104090000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:104088600-104090200	Strong transcription	NHEK	skin
18	chr4:104088600-104090400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr4:104088600-104091600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:104088600-104109000	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr4:104088800-104089800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:104088800-104089800	Strong transcription	Duodenum Mucosa	Duodenum
23	chr4:104088800-104090000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:104088800-104090000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:104088800-104090000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:104088800-104090000	Strong transcription	Primary T cells from cord blood	blood
27	chr4:104088800-104090000	ZNF genes & repeats	Aorta	Aorta
28	chr4:104088800-104090000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr4:104088800-104090000	ZNF genes & repeats	Fetal Stomach	stomach
30	chr4:104088800-104090200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr4:104088800-104090200	Strong transcription	Fetal Intestine Large	intestine
32	chr4:104088800-104090200	ZNF genes & repeats	Fetal Intestine Small	intestine
33	chr4:104088800-104090200	Strong transcription	Fetal Muscle Trunk	muscle
34	chr4:104088800-104090200	ZNF genes & repeats	Gastric	stomach
35	chr4:104088800-104090200	Strong transcription	HepG2	liver
36	chr4:104088800-104090200	Strong transcription	HUVEC	blood vessel
37	chr4:104088800-104090600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
38	chr4:104088800-104090800	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr4:104088800-104090800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr4:104088800-104091000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:104088800-104091800	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr4:104088800-104091800	Strong transcription	K562	blood
43	chr4:104088800-104092000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr4:104089000-104089800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:104089000-104089800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr4:104089000-104089800	ZNF genes & repeats	Spleen	Spleen
47	chr4:104089000-104089800	Strong transcription	NHDF-Ad	bronchial
48	chr4:104089000-104090200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr4:104089000-104090200	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr4:104089000-104090200	ZNF genes & repeats	Fetal Brain Female	brain

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