Variant report

Variant	rs573556548
Chromosome Location	chr14:24505784-24505785
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24504090..24505966-chr14:24768791..24770568,2	MCF-7	breast:
2	chr14:24503791..24508058-chr14:24562194..24566408,5	MCF-7	breast:
3	chr14:24505124..24506975-chr14:24520204..24522367,2	MCF-7	breast:
4	chr14:24504490..24506127-chr14:24583788..24585514,2	MCF-7	breast:
5	chr14:24505359..24507247-chr14:24702110..24704400,2	MCF-7	breast:
6	chr14:24422701..24424551-chr14:24504249..24506129,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100889	Chromatin interaction
ENSG00000215256	Chromatin interaction
ENSG00000157326	Chromatin interaction
ENSG00000100897	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000186648	Chromatin interaction
ENSG00000100938	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000196943	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv1217	chr14:24400565-24512689	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049316	chr14:24405420-24583724	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv541999	chr14:24405420-24583724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	esv2761633	chr14:24423582-24513917	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv564047	chr14:24428509-24525634	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv901497	chr14:24429249-24514449	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1052180	chr14:24429298-24555710	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv826901	chr14:24457315-24508468	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv1048292	chr14:24474511-24513905	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
11	nsv1049192	chr14:24478882-24519250	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
12	nsv1037929	chr14:24478882-24522447	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
13	nsv1052857	chr14:24479375-24513905	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
14	nsv1047042	chr14:24484459-24513905	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
15	nsv1038839	chr14:24488131-24510197	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
16	nsv1044763	chr14:24488131-24513905	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
17	nsv1051893	chr14:24488131-24519250	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
18	nsv1043854	chr14:24488131-24522447	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
19	nsv1049849	chr14:24488384-24513905	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
20	nsv516023	chr14:24489605-24550224	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
21	nsv1038278	chr14:24494063-24513905	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
22	nsv1042507	chr14:24494153-24513905	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
23	nsv983808	chr14:24503854-24523979	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
24	nsv482170	chr14:24505710-24520580	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24505000-24506200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:24505000-24506200	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr14:24505000-24506200	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr14:24505000-24506200	Active TSS	Brain Anterior Caudate	brain
5	chr14:24505000-24506200	Active TSS	Stomach Smooth Muscle	stomach
6	chr14:24505000-24506200	Active TSS	A549	lung
7	chr14:24505000-24506400	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr14:24505000-24506600	Flanking Active TSS	Dnd41	blood
9	chr14:24505200-24505800	Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr14:24505200-24505800	Active TSS	Fetal Lung	lung
11	chr14:24505200-24505800	Active TSS	Fetal Stomach	stomach
12	chr14:24505200-24505800	Flanking Active TSS	Fetal Thymus	thymus
13	chr14:24505200-24506000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:24505200-24506000	Active TSS	Fetal Brain Female	brain
15	chr14:24505200-24506000	Active TSS	GM12878-XiMat	blood
16	chr14:24505200-24506200	Active TSS	H1 Cell Line	embryonic stem cell
17	chr14:24505200-24506200	Active TSS	H9 Cell Line	embryonic stem cell
18	chr14:24505200-24506200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr14:24505200-24506200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:24505200-24506200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:24505200-24506200	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr14:24505200-24506200	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr14:24505200-24506200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr14:24505200-24506200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:24505200-24506200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:24505200-24506200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:24505200-24506200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
28	chr14:24505200-24506200	Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr14:24505200-24506200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr14:24505200-24506200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr14:24505200-24506200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr14:24505200-24506200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr14:24505200-24506200	Active TSS	Brain Cingulate Gyrus	brain
34	chr14:24505200-24506200	Active TSS	Brain Hippocampus Middle	brain
35	chr14:24505200-24506200	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr14:24505200-24506200	Active TSS	Colon Smooth Muscle	Colon
37	chr14:24505200-24506200	Active TSS	Duodenum Mucosa	Duodenum
38	chr14:24505200-24506200	Active TSS	Fetal Heart	heart
39	chr14:24505200-24506200	Active TSS	Fetal Intestine Large	intestine
40	chr14:24505200-24506200	Active TSS	Left Ventricle	heart
41	chr14:24505200-24506200	Active TSS	Psoas Muscle	Psoas
42	chr14:24505200-24506200	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr14:24505200-24506200	Active TSS	Rectal Mucosa Donor 31	rectum
44	chr14:24505200-24506200	Active TSS	Rectal Smooth Muscle	rectum
45	chr14:24505200-24506200	Active TSS	Right Ventricle	heart
46	chr14:24505200-24506200	Active TSS	Small Intestine	intestine
47	chr14:24505200-24506200	Active TSS	Hela-S3	cervix
48	chr14:24505200-24506200	Active TSS	Osteobl	bone
49	chr14:24505200-24506400	Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr14:24505200-24506400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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