Variant report

Variant	rs57356077
Chromosome Location	chr4:119949822-119949823
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:119903981..119906939-chr4:119947642..119950040,2	MCF-7	breast:
2	chr4:119949102..119951001-chr4:120133372..120135620,2	MCF-7	breast:
3	chr4:119948393..119951325-chr4:119952925..119955236,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178636	Chromatin interaction
ENSG00000145390	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11931351	1.00[AMR][1000 genomes]
rs11934370	1.00[AMR][1000 genomes]
rs1459064	1.00[AMR][1000 genomes]
rs17050014	1.00[AMR][1000 genomes]
rs28528945	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119941800-119961200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:119946600-119951000	Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr4:119946800-119951000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:119946800-119957000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:119947000-119952200	Weak transcription	Brain Angular Gyrus	brain
6	chr4:119947200-119959800	Weak transcription	Brain Anterior Caudate	brain
7	chr4:119947400-119951000	Active TSS	HSMMtube	muscle
8	chr4:119947400-119951200	Weak transcription	Fetal Kidney	kidney
9	chr4:119947400-119955400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:119947400-119955600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:119947600-119951000	Active TSS	Rectal Smooth Muscle	rectum
12	chr4:119947600-119951200	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr4:119947800-119951000	Active TSS	Colon Smooth Muscle	Colon
14	chr4:119947800-119954400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:119948000-119951000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:119948000-119951200	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr4:119948000-119951200	Weak transcription	Spleen	Spleen
18	chr4:119948200-119951000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:119948200-119951000	Active TSS	Stomach Smooth Muscle	stomach
20	chr4:119948200-119951000	Active TSS	HSMM	muscle
21	chr4:119948200-119951400	Weak transcription	Lung	lung
22	chr4:119948200-119955000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:119948200-119955400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr4:119948200-119955400	Weak transcription	HMEC	breast
25	chr4:119948200-119961000	Weak transcription	Brain Hippocampus Middle	brain
26	chr4:119948200-119961800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:119948200-119961800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr4:119948400-119950400	Active TSS	Fetal Muscle Leg	muscle
29	chr4:119948400-119950800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:119948400-119951000	Weak transcription	Gastric	stomach
31	chr4:119948600-119950200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:119948600-119950600	Active TSS	NHLF	lung
33	chr4:119948600-119951000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:119948600-119951000	Weak transcription	Fetal Heart	heart
35	chr4:119948600-119951000	Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr4:119948600-119951000	Active TSS	NHDF-Ad	bronchial
37	chr4:119948600-119951200	Weak transcription	Left Ventricle	heart
38	chr4:119948600-119955200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr4:119948800-119951000	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr4:119948800-119951000	Weak transcription	Aorta	Aorta
41	chr4:119948800-119951000	Weak transcription	Esophagus	oesophagus
42	chr4:119949200-119951000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr4:119949200-119951000	Weak transcription	Fetal Intestine Small	intestine
44	chr4:119949200-119951200	Weak transcription	Colonic Mucosa	Colon
45	chr4:119949200-119954400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:119949200-119955000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr4:119949200-119957000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr4:119949200-119961000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr4:119949200-119961000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr4:119949600-119950400	Active TSS	Muscle Satellite Cultured Cells	--

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