Variant report

Variant	rs573561747
Chromosome Location	chr22:31455916-31455917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr22:31455777-31456050	K562	blood:	n/a	n/a
2	MAFK	chr22:31455781-31455986	HepG2	liver:	n/a	chr22:31455875-31455884 chr22:31455870-31455885 chr22:31455875-31455885 chr22:31455874-31455888
3	FOSL2	chr22:31455699-31456050	HepG2	liver:	n/a	n/a
4	FOS	chr22:31455812-31455929	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr22:31455808-31455978	MCF10A-Er-Src	breast:	n/a	n/a
6	MAFK	chr22:31455784-31455979	HepG2	liver:	n/a	chr22:31455875-31455884 chr22:31455870-31455885 chr22:31455875-31455885 chr22:31455874-31455888
7	UBTF	chr22:31455778-31455955	K562	blood:	n/a	n/a
8	MAFF	chr22:31455789-31455989	HepG2	liver:	n/a	chr22:31455874-31455888 chr22:31455868-31455886
9	MAFK	chr22:31455743-31456190	K562	blood:	n/a	chr22:31455875-31455884 chr22:31455870-31455885 chr22:31455875-31455885 chr22:31455874-31455888
10	FOS	chr22:31455807-31455969	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr22:31363469..31366268-chr22:31450278..31456884,6	MCF-7	breast:
2	chr22:31455769..31462183-chr22:31475245..31482356,13	K562	blood:
3	chr22:31455775..31461842-chr22:31476267..31480955,13	MCF-7	breast:

Variant related genes	Relation type
SMTN	TF binding region
RN7SL633P	TF binding region
ENSG00000133422	Chromatin interaction
ENSG00000273387	Chromatin interaction
ENSG00000183963	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9896	chr22:31369204-31513933	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv524366	chr22:31440703-31480069	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv829173	chr22:31450043-31543956	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv964620	chr22:31452981-31465140	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv962852	chr22:31455516-31465140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31452000-31458000	Weak transcription	Adipose Nuclei	Adipose
2	chr22:31452200-31456000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr22:31452200-31456000	Weak transcription	NHEK	skin
4	chr22:31452800-31456800	Weak transcription	Hela-S3	cervix
5	chr22:31452800-31458200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr22:31455400-31456200	Enhancers	Fetal Lung	lung
7	chr22:31455400-31456200	Enhancers	Fetal Stomach	stomach
8	chr22:31455400-31458400	Enhancers	K562	blood
9	chr22:31455600-31456000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr22:31455600-31456000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr22:31455600-31456000	Enhancers	Fetal Muscle Trunk	muscle
12	chr22:31455600-31456000	Enhancers	Fetal Muscle Leg	muscle
13	chr22:31455600-31456000	Enhancers	Lung	lung
14	chr22:31455600-31456000	Enhancers	Ovary	ovary
15	chr22:31455600-31456000	Enhancers	HMEC	breast
16	chr22:31455600-31456200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr22:31455600-31456200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr22:31455600-31456200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr22:31455600-31456200	Enhancers	A549	lung
20	chr22:31455600-31456400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr22:31455600-31456400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr22:31455600-31456400	Enhancers	Fetal Intestine Large	intestine
23	chr22:31455600-31456400	Enhancers	Fetal Intestine Small	intestine
24	chr22:31455600-31456400	Enhancers	Placenta	Placenta
25	chr22:31455600-31456400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr22:31455600-31456600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr22:31455600-31457000	Enhancers	HepG2	liver
28	chr22:31455600-31457600	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr22:31455800-31456000	Enhancers	Stomach Smooth Muscle	stomach
30	chr22:31455800-31456200	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr22:31455800-31456200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr22:31455800-31456400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr22:31455800-31457400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr22:31455800-31458400	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links