Variant report

Variant	rs57356563
Chromosome Location	chr11:68066934-68066935
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:68065500..68067859-chr11:68082102..68086074,3	MCF-7	breast:
2	chr11:68057111..68058880-chr11:68065372..68067139,2	K562	blood:
3	chr11:68035470..68040704-chr11:68063460..68067753,9	MCF-7	breast:
4	chr11:68065319..68067003-chr11:68078730..68080797,2	K562	blood:
5	chr11:68020408..68022224-chr11:68066797..68069324,2	MCF-7	breast:
6	chr11:68023085..68029563-chr11:68062886..68068108,10	K562	blood:
7	chr11:68037273..68040691-chr11:68063074..68067877,6	K562	blood:
8	chr11:68031189..68035426-chr11:68065134..68068742,5	K562	blood:
9	chr11:68023658..68026567-chr11:68063671..68067892,6	K562	blood:
10	chr11:68065503..68069323-chr11:68077534..68081604,5	K562	blood:
11	chr11:67980118..67984820-chr11:68063296..68068146,8	MCF-7	breast:
12	chr11:68037273..68041335-chr11:68062983..68069935,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000110066	Chromatin interaction
ENSG00000162337	Chromatin interaction
ENSG00000171067	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59271322	1.00[AMR][1000 genomes]
rs61752547	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
2	esv3347272	chr11:67969427-68218997	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv897857	chr11:68056770-68231240	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	esv3479397	chr11:68066920-68069567	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3479408	chr11:68066920-68069567	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68061800-68070000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr11:68064200-68067000	Enhancers	Gastric	stomach
3	chr11:68065000-68068000	Enhancers	Right Ventricle	heart
4	chr11:68065000-68071600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:68065400-68067000	Flanking Active TSS	Liver	Liver
6	chr11:68065600-68067000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr11:68065600-68069800	Weak transcription	HSMM	muscle
8	chr11:68065600-68070000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:68065600-68070000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:68065600-68070000	Weak transcription	Thymus	Thymus
11	chr11:68065600-68070200	Weak transcription	GM12878-XiMat	blood
12	chr11:68065600-68079200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:68065800-68069800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:68065800-68070200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr11:68065800-68070200	Weak transcription	K562	blood
16	chr11:68065800-68078400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:68066000-68067000	Enhancers	Hela-S3	cervix
18	chr11:68066200-68067000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:68066200-68067000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr11:68066200-68067000	Enhancers	Stomach Mucosa	stomach
21	chr11:68066200-68068200	Enhancers	Fetal Intestine Small	intestine
22	chr11:68066200-68070200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:68066400-68068200	Enhancers	Fetal Intestine Large	intestine
24	chr11:68066600-68067000	Enhancers	Duodenum Mucosa	Duodenum
25	chr11:68066600-68067000	Enhancers	Lung	lung
26	chr11:68066600-68067000	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr11:68066600-68067000	Flanking Bivalent TSS/Enh	HepG2	liver
28	chr11:68066600-68068200	Enhancers	Colonic Mucosa	Colon
29	chr11:68066600-68069600	Weak transcription	Fetal Muscle Leg	muscle
30	chr11:68066600-68070200	Weak transcription	Placenta	Placenta
31	chr11:68066600-68078800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:68066800-68067000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:68066800-68067000	Weak transcription	Left Ventricle	heart
34	chr11:68066800-68067200	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr11:68066800-68067800	Enhancers	A549	lung
36	chr11:68066800-68068000	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr11:68066800-68069800	Weak transcription	Adipose Nuclei	Adipose
38	chr11:68066800-68069800	Weak transcription	Small Intestine	intestine
39	chr11:68066800-68070000	Weak transcription	Spleen	Spleen
40	chr11:68066800-68071000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:68066800-68079600	Weak transcription	Right Atrium	heart

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