Variant report

Variant	rs57356584
Chromosome Location	chr3:139038566-139038567
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10513063	0.89[EUR][1000 genomes]
rs1602626	0.89[EUR][1000 genomes]
rs1602628	0.89[EUR][1000 genomes]
rs17316181	0.89[EUR][1000 genomes]
rs17335312	0.89[EUR][1000 genomes]
rs17394620	0.89[EUR][1000 genomes]
rs2291555	0.89[EUR][1000 genomes]
rs2307031	0.89[EUR][1000 genomes]
rs41399544	0.89[EUR][1000 genomes]
rs56993164	0.89[EUR][1000 genomes]
rs58060926	0.89[EUR][1000 genomes]
rs59958973	0.89[EUR][1000 genomes]
rs59960641	0.89[EUR][1000 genomes]
rs61613889	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005158	chr3:139001736-139073011	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv877543	chr3:139021139-139327261	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv4034	chr3:139034976-139080133	Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139026000-139038800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:139032400-139048000	Weak transcription	Right Atrium	heart
3	chr3:139035600-139041200	Enhancers	K562	blood
4	chr3:139037000-139039000	Enhancers	Ovary	ovary
5	chr3:139037000-139041200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:139037000-139041600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:139037400-139038600	Enhancers	Fetal Muscle Leg	muscle
8	chr3:139037400-139044200	Weak transcription	Pancreas	Pancrea
9	chr3:139037400-139047800	Weak transcription	NHDF-Ad	bronchial
10	chr3:139037600-139038600	Weak transcription	Fetal Lung	lung
11	chr3:139037600-139039400	Weak transcription	A549	lung
12	chr3:139037800-139047600	Weak transcription	Hela-S3	cervix
13	chr3:139038000-139038800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:139038400-139039000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr3:139038400-139048000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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