Variant report

Variant	rs57357960
Chromosome Location	chr8:58848574-58848575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56283964	0.82[AFR][1000 genomes]
rs73248705	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831323	chr8:58692548-58849862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv611411	chr8:58835639-58878786	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58841200-58849800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:58842400-58851000	Enhancers	Fetal Lung	lung
3	chr8:58843800-58849200	Weak transcription	Fetal Intestine Small	intestine
4	chr8:58846600-58848600	Weak transcription	Fetal Stomach	stomach
5	chr8:58846600-58849200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:58846800-58848600	Weak transcription	Fetal Kidney	kidney
7	chr8:58847000-58848800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:58847000-58848800	Weak transcription	Fetal Heart	heart
9	chr8:58847200-58848800	Weak transcription	NHLF	lung
10	chr8:58847400-58848600	Weak transcription	NHDF-Ad	bronchial
11	chr8:58847400-58849000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr8:58847600-58848800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:58847600-58848800	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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