Variant report

Variant	rs573583601
Chromosome Location	chr3:113438691-113438692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:113437875..113440758-chr3:113442135..113445039,2	MCF-7	breast:
2	chr3:113419849..113421938-chr3:113437398..113440132,2	MCF-7	breast:
3	chr3:113413854..113415987-chr3:113438582..113440187,2	MCF-7	breast:
4	chr3:113425527..113427592-chr3:113438461..113440250,2	K562	blood:

Variant related genes	Relation type
ENSG00000176542	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv1799124	chr3:113426201-113468350	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv482804	chr3:113432431-113581672	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv519099	chr3:113436847-113450495	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv980038	chr3:113437936-113440636	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv965362	chr3:113437936-113441255	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113431400-113439400	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:113431400-113439400	Weak transcription	K562	blood
3	chr3:113431600-113439600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:113431600-113443600	Weak transcription	Brain Substantia Nigra	brain
5	chr3:113431800-113438800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr3:113432000-113439600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:113432200-113439400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr3:113432200-113440600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:113432200-113447000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:113432400-113439400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:113432600-113438800	Weak transcription	Primary T cells from cord blood	blood
12	chr3:113432600-113438800	Weak transcription	HSMMtube	muscle
13	chr3:113432800-113463000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:113432800-113463000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:113433000-113439200	Weak transcription	Ovary	ovary
16	chr3:113433000-113445400	Weak transcription	Fetal Intestine Small	intestine
17	chr3:113433000-113460000	Weak transcription	Aorta	Aorta
18	chr3:113433200-113439400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:113433600-113450200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:113433800-113439000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr3:113433800-113441600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:113433800-113442800	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr3:113434000-113440600	Weak transcription	NHLF	lung
24	chr3:113434000-113441800	Weak transcription	Fetal Kidney	kidney
25	chr3:113434000-113444600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:113434400-113438800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr3:113434600-113439200	Weak transcription	HepG2	liver
28	chr3:113434800-113439400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:113434800-113439400	Weak transcription	Left Ventricle	heart
30	chr3:113434800-113440000	Weak transcription	Small Intestine	intestine
31	chr3:113435000-113444200	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr3:113435000-113444800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr3:113435000-113463000	Weak transcription	Brain Germinal Matrix	brain
34	chr3:113435200-113439200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:113435200-113439400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr3:113435200-113450400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr3:113435200-113463000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr3:113435200-113463000	Weak transcription	Esophagus	oesophagus
39	chr3:113435400-113438800	Weak transcription	Fetal Brain Male	brain
40	chr3:113435400-113439400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:113435400-113439400	Weak transcription	Colon Smooth Muscle	Colon
42	chr3:113435400-113439400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr3:113435400-113444000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:113435400-113456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr3:113435400-113462600	Weak transcription	Brain Angular Gyrus	brain
46	chr3:113435600-113440400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr3:113435600-113442800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr3:113435600-113445600	Weak transcription	Right Ventricle	heart
49	chr3:113435600-113449400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr3:113435600-113462200	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links