Variant report

Variant	rs573589709
Chromosome Location	chr11:59384637-59384638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SREBP1	chr11:59382112-59385589	GM12878	blood:	n/a	n/a
2	MXI1	chr11:59381803-59384654	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr11:59382037-59384768	GM12878	blood:	n/a	n/a
4	ZNF384	chr11:59384616-59384756	GM12878	blood:	n/a	n/a
5	POLR2A	chr11:59382109-59384724	PBDE	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59313058..59315835-chr11:59384202..59386133,2	K562	blood:
2	chr11:59380013..59385486-chr11:59434648..59438262,9	MCF-7	breast:
3	chr11:59381725..59384642-chr11:59521273..59522941,2	K562	blood:
4	chr11:59379597..59385439-chr11:59434812..59438230,12	K562	blood:
5	chr11:59381899..59384726-chr11:59386703..59391439,4	MCF-7	breast:
6	chr11:59382734..59385576-chr11:59440781..59442919,2	K562	blood:
7	chr11:59324538..59326283-chr11:59383295..59385264,2	K562	blood:
8	chr11:59383955..59385521-chr11:59435044..59437957,2	MCF-7	breast:
9	chr11:59381143..59385193-chr11:59434975..59438411,10	K562	blood:
10	chr11:59352549..59354078-chr11:59384301..59386875,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STX3-2	chr11:59383619-59385512	NONHSAT021532

No data

Variant related genes	Relation type
OSBP	TF binding region
ENSG00000255139	TF binding region
ENSG00000166900	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000252893	Chromatin interaction
ENSG00000255355	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000254477	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797571	chr11:59383323-59424688	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1797737	chr11:59383323-59424688	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1802782	chr11:59383323-59448068	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59382200-59384800	Active TSS	A549	lung
2	chr11:59382400-59384800	Active TSS	Thymus	Thymus
3	chr11:59382800-59384800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:59384000-59384800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:59384000-59384800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr11:59384000-59384800	Flanking Active TSS	Dnd41	blood
7	chr11:59384000-59384800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr11:59384400-59384800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:59384400-59384800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:59384400-59384800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:59384400-59384800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:59384400-59384800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:59384400-59384800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr11:59384400-59384800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:59384400-59384800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:59384400-59384800	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr11:59384400-59384800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr11:59384400-59384800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr11:59384400-59384800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr11:59384400-59384800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:59384400-59384800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:59384400-59384800	Enhancers	Liver	Liver
23	chr11:59384400-59384800	Enhancers	Brain Angular Gyrus	brain
24	chr11:59384400-59384800	Enhancers	Duodenum Mucosa	Duodenum
25	chr11:59384400-59384800	Enhancers	Fetal Heart	heart
26	chr11:59384400-59384800	Enhancers	Fetal Intestine Small	intestine
27	chr11:59384400-59384800	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr11:59384400-59384800	Enhancers	GM12878-XiMat	blood
29	chr11:59384400-59384800	Enhancers	NHDF-Ad	bronchial
30	chr11:59384400-59384800	Enhancers	NHEK	skin
31	chr11:59384400-59385000	Enhancers	Primary T cells from cord blood	blood
32	chr11:59384400-59385200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:59384400-59385200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:59384400-59385200	Enhancers	HepG2	liver
35	chr11:59384400-59385400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr11:59384400-59385400	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr11:59384400-59386000	Weak transcription	Placenta	Placenta
38	chr11:59384400-59390000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:59384400-59396600	Weak transcription	Fetal Thymus	thymus
40	chr11:59384400-59396800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr11:59384400-59397400	Weak transcription	Adipose Nuclei	Adipose
42	chr11:59384400-59402600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:59384400-59404400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr11:59384600-59384800	Enhancers	Primary B cells from cord blood	blood
45	chr11:59384600-59384800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:59384600-59384800	Enhancers	HMEC	breast
47	chr11:59384600-59384800	Flanking Active TSS	K562	blood
48	chr11:59384600-59384800	Flanking Active TSS	NH-A	brain
49	chr11:59384600-59385000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr11:59384600-59385000	Enhancers	Pancreatic Islets	Pancreatic Islet

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