Variant report

Variant	rs57359868
Chromosome Location	chr11:10646679-10646680
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10646201..10648007-chr11:10771247..10773979,3	K562	blood:
2	chr11:10645775..10647638-chr11:10757654..10759171,2	K562	blood:
3	chr11:10646146..10646679-chr11:10675883..10676500,2	MCF-7	breast:
4	chr11:10645710..10647291-chr11:10756891..10757870,13	MCF-7	breast:
5	chr11:10646060..10648151-chr11:10673265..10675917,2	K562	blood:
6	chr11:10645536..10647018-chr11:10756988..10757969,13	K562	blood:
7	chr11:10645746..10646712-chr11:10675224..10676417,4	K562	blood:
8	chr11:10586118..10586944-chr11:10645939..10647016,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198730	Chromatin interaction
ENSG00000072952	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10500729	0.92[EUR][1000 genomes]
rs10500730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16908075	0.85[EUR][1000 genomes]
rs16908086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16908093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35296427	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10629400-10650800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:10629400-10663600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:10629600-10662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:10633800-10647000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:10637800-10659200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:10639800-10661600	Weak transcription	Gastric	stomach
7	chr11:10640600-10661400	Weak transcription	Left Ventricle	heart
8	chr11:10642600-10647000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:10642800-10647000	Strong transcription	Aorta	Aorta
10	chr11:10642800-10647400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:10643600-10652400	Strong transcription	NHLF	lung
12	chr11:10643600-10653400	Enhancers	Primary B cells from peripheral blood	blood
13	chr11:10643800-10647600	Enhancers	Primary B cells from cord blood	blood
14	chr11:10643800-10648200	Enhancers	Lung	lung
15	chr11:10644000-10659600	Weak transcription	Osteobl	bone
16	chr11:10644400-10648000	Enhancers	Adipose Nuclei	Adipose
17	chr11:10644400-10648000	Enhancers	Placenta	Placenta
18	chr11:10644600-10646800	Enhancers	Primary T cells fromperipheralblood	blood
19	chr11:10644600-10647400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr11:10644600-10647400	Enhancers	Fetal Muscle Trunk	muscle
21	chr11:10644600-10647600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:10644600-10647600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:10644800-10647200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr11:10645000-10647200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:10645000-10649200	Genic enhancers	Stomach Smooth Muscle	stomach
26	chr11:10645200-10646800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr11:10645200-10647000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:10645200-10647600	Enhancers	Brain Hippocampus Middle	brain
29	chr11:10645200-10648000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:10645200-10648000	Weak transcription	Ovary	ovary
31	chr11:10645200-10648400	Enhancers	Colon Smooth Muscle	Colon
32	chr11:10645400-10647200	Enhancers	Brain Substantia Nigra	brain
33	chr11:10645400-10647600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr11:10645400-10648000	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr11:10645600-10647400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:10645600-10648000	Enhancers	Brain Anterior Caudate	brain
37	chr11:10645600-10648000	Enhancers	Rectal Smooth Muscle	rectum
38	chr11:10645800-10646800	Enhancers	Right Atrium	heart
39	chr11:10645800-10647600	Weak transcription	Colonic Mucosa	Colon
40	chr11:10645800-10648000	Enhancers	Spleen	Spleen
41	chr11:10645800-10648200	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr11:10646000-10646800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:10646000-10646800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr11:10646000-10647800	Strong transcription	Fetal Intestine Small	intestine
45	chr11:10646000-10648000	Enhancers	Psoas Muscle	Psoas
46	chr11:10646000-10649800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:10646000-10649800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:10646000-10649800	Weak transcription	Thymus	Thymus
49	chr11:10646000-10661600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung

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