Variant report

Variant	rs573601994
Chromosome Location	chr6:37503541-37503542
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37479736..37482449-chr6:37501228..37503661,2	K562	blood:
2	chr6:37497734..37501605-chr6:37502729..37507040,5	K562	blood:
3	chr6:37479736..37486031-chr6:37501228..37507298,5	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FTSJD2-1	chr6:37503308-37509148	XLOC_005278
2	lnc-FTSJD2-1	chr6:37503308-37503665	XLOC_005278
3	lnc-FTSJD2-1	chr6:37503308-37503665	XLOC_005278
4	lnc-FTSJD2-1	chr6:37503308-37506306	ENSG00000204110.5

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv462914	chr6:37502585-37517485	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv602954	chr6:37502585-37517485	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37493800-37514000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:37501400-37503600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:37502000-37504400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:37502800-37503600	Bivalent Enhancer	Fetal Stomach	stomach
5	chr6:37502800-37503800	Bivalent Enhancer	Fetal Kidney	kidney
6	chr6:37502800-37504000	Bivalent Enhancer	Fetal Brain Male	brain
7	chr6:37502800-37505800	Bivalent Enhancer	Fetal Lung	lung
8	chr6:37503000-37503600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:37503000-37503600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:37503000-37503800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:37503000-37503800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr6:37503000-37504000	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr6:37503000-37504000	Bivalent Enhancer	Fetal Thymus	thymus
14	chr6:37503200-37503600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
15	chr6:37503200-37503600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
16	chr6:37503200-37503600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:37503200-37503600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
18	chr6:37503200-37503600	Bivalent Enhancer	Primary B cells from cord blood	blood
19	chr6:37503200-37503600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
20	chr6:37503200-37503600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:37503200-37503600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:37503200-37503600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:37503200-37503600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:37503200-37503600	Bivalent Enhancer	Fetal Intestine Small	intestine
25	chr6:37503200-37503600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
26	chr6:37503200-37503600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
27	chr6:37503200-37503600	Bivalent Enhancer	NH-A	brain
28	chr6:37503200-37503800	Bivalent Enhancer	Colonic Mucosa	Colon
29	chr6:37503200-37504000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:37503200-37504000	Bivalent Enhancer	Fetal Intestine Large	intestine
31	chr6:37503200-37504200	Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr6:37503200-37504200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
33	chr6:37503200-37504400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
34	chr6:37503200-37504400	Enhancers	Liver	Liver
35	chr6:37503200-37504400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
36	chr6:37503200-37504600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
37	chr6:37503200-37504600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:37503200-37504600	Bivalent Enhancer	Placenta	Placenta
39	chr6:37503200-37505000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
40	chr6:37503200-37505000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr6:37503400-37503600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
42	chr6:37503400-37503600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:37503400-37503600	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
44	chr6:37503400-37503600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
45	chr6:37503400-37503600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:37503400-37503600	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:37503400-37503600	Flanking Active TSS	Brain Angular Gyrus	brain
48	chr6:37503400-37503600	Bivalent Enhancer	Brain Substantia Nigra	brain
49	chr6:37503400-37503600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
50	chr6:37503400-37503600	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum

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