Variant report

Variant	rs57363717
Chromosome Location	chr15:33070852-33070853
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10519747	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1057472	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11630340	0.82[ASN][1000 genomes]
rs11631485	0.91[ASN][1000 genomes]
rs11632517	0.87[ASN][1000 genomes]
rs16958518	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16958537	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16958624	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16958630	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16958710	0.83[ASN][1000 genomes]
rs16958712	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16958843	0.94[ASN][1000 genomes]
rs17816375	0.87[ASN][1000 genomes]
rs2037842	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2037843	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2037844	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28674168	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3743108	0.83[ASN][1000 genomes]
rs3812927	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3812932	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs727945	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74011956	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74011957	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74011958	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74011964	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv832961	chr15:33021177-33134988	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv903977	chr15:33040782-33117302	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2763090	chr15:33042338-33072151	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases
8	esv3397782	chr15:33068885-33071508	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	n/a
9	esv3322326	chr15:33069360-33071158	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33060600-33097600	Weak transcription	Thymus	Thymus
2	chr15:33061200-33141000	Weak transcription	Placenta	Placenta
3	chr15:33062600-33111200	Weak transcription	Gastric	stomach
4	chr15:33063200-33082400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:33063800-33094400	Weak transcription	Fetal Stomach	stomach
6	chr15:33064800-33074000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:33065800-33098600	Weak transcription	Colonic Mucosa	Colon
8	chr15:33067200-33071000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr15:33067200-33077800	Weak transcription	NHLF	lung
10	chr15:33067200-33089000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:33067400-33076600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:33067400-33078800	Weak transcription	HSMMtube	muscle
13	chr15:33067600-33071200	Weak transcription	HSMM	muscle
14	chr15:33068800-33073600	Weak transcription	NH-A	brain
15	chr15:33069200-33071200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:33069200-33074000	Weak transcription	Osteobl	bone
17	chr15:33070600-33071000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr15:33070600-33071400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:33070600-33072200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:33070600-33072800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
21	chr15:33070600-33078600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:33070800-33071400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:33070800-33071400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
24	chr15:33070800-33071400	ZNF genes & repeats	NHDF-Ad	bronchial

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