Variant report

Variant	rs573652372
Chromosome Location	chr3:49506167-49506168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:49447402..49451449-chr3:49505916..49509646,7	K562	blood:
2	chr3:49447402..49452044-chr3:49506038..49509646,9	K562	blood:
3	chr3:49505441..49508480-chr3:49710122..49713377,5	MCF-7	breast:
4	chr3:49501861..49505109-chr3:49505439..49508808,5	K562	blood:
5	chr3:49448236..49450769-chr3:49505936..49509558,3	MCF-7	breast:
6	chr3:49043383..49045852-chr3:49505855..49507402,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DAG1-1	chr3:49506146-49506488	NONHSAT089696

No data

Variant related genes	Relation type
ENSG00000145022	Chromatin interaction
ENSG00000164062	Chromatin interaction
ENSG00000201301	Chromatin interaction
ENSG00000178252	Chromatin interaction
ENSG00000067560	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3420339	chr3:49505548-49510046	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49490600-49506600	Enhancers	Fetal Muscle Leg	muscle
2	chr3:49491800-49506200	Enhancers	Placenta	Placenta
3	chr3:49497400-49506400	Weak transcription	Brain Germinal Matrix	brain
4	chr3:49499600-49506600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:49500000-49506200	Weak transcription	Adipose Nuclei	Adipose
6	chr3:49500000-49506400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:49500000-49506400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:49500000-49506400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:49500000-49506400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:49500000-49506400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:49500000-49506400	Weak transcription	Psoas Muscle	Psoas
12	chr3:49500000-49506400	Weak transcription	NH-A	brain
13	chr3:49500000-49506400	Weak transcription	NHDF-Ad	bronchial
14	chr3:49500000-49506600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:49501400-49506600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:49502200-49506600	Enhancers	Fetal Muscle Trunk	muscle
17	chr3:49502400-49506400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:49502600-49506800	Enhancers	Fetal Heart	heart
19	chr3:49503000-49506600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:49503400-49506200	Weak transcription	A549	lung
21	chr3:49503400-49506400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr3:49503400-49506400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:49503400-49506400	Weak transcription	Colonic Mucosa	Colon
24	chr3:49503400-49506400	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr3:49503600-49506400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:49503600-49506400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:49503600-49506400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr3:49503600-49506400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:49503600-49506400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:49503600-49506400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:49503600-49506400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:49503600-49506400	Weak transcription	Brain Anterior Caudate	brain
33	chr3:49503600-49506400	Weak transcription	Fetal Intestine Large	intestine
34	chr3:49503600-49506400	Weak transcription	HSMM	muscle
35	chr3:49503600-49506400	Weak transcription	NHEK	skin
36	chr3:49503600-49506600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr3:49503600-49506600	Weak transcription	Brain Angular Gyrus	brain
38	chr3:49503600-49507200	Weak transcription	Spleen	Spleen
39	chr3:49503800-49506400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:49503800-49506400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:49503800-49506400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr3:49503800-49506400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr3:49503800-49506400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr3:49503800-49506400	Weak transcription	Brain Hippocampus Middle	brain
45	chr3:49503800-49506400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr3:49503800-49506400	Weak transcription	Brain Substantia Nigra	brain
47	chr3:49503800-49506400	Weak transcription	Gastric	stomach
48	chr3:49503800-49506400	Weak transcription	Right Atrium	heart
49	chr3:49503800-49506400	Enhancers	HepG2	liver
50	chr3:49503800-49506400	Weak transcription	HMEC	breast

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