Variant report

Variant	rs573695820
Chromosome Location	chr12:29218730-29218731
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2758301	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759888	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2761730	chr12:29206071-29221852	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv519276	chr12:29210121-29226080	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv557914	chr12:29210121-29226080	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29217800-29219800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:29217800-29220600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:29217800-29220800	Enhancers	Brain Hippocampus Middle	brain
4	chr12:29218000-29218800	Enhancers	Brain Cingulate Gyrus	brain
5	chr12:29218000-29219000	Enhancers	Brain Anterior Caudate	brain
6	chr12:29218000-29219400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr12:29218000-29220600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr12:29218000-29221200	Enhancers	Brain Substantia Nigra	brain
9	chr12:29218200-29218800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr12:29218200-29219200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:29218200-29220200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:29218400-29219000	Enhancers	Brain Germinal Matrix	brain
13	chr12:29218600-29219000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr12:29218600-29219000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr12:29218600-29219600	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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