Variant report

Variant	rs57372542
Chromosome Location	chr18:40401519-40401520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10502804	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1113189	0.95[ASN][1000 genomes]
rs12454579	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12455240	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12606847	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12606859	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16977063	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16977068	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1943944	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1944417	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73951748	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40396200-40403000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr18:40397600-40402000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:40400000-40401800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr18:40400000-40402400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr18:40400000-40403000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr18:40400800-40402200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr18:40400800-40403000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr18:40401200-40403000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr18:40401400-40401800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr18:40401400-40402200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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