Variant report

Variant	rs573739223
Chromosome Location	chr4:1340108-1340109
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr4:1339740-1341572	GM12878	blood:	n/a	chr4:1340991-1341001 chr4:1340986-1340996
2	POLR2A	chr4:1340036-1341589	GM15510	blood:	n/a	n/a
3	POLR2A	chr4:1339585-1341618	H1-neurons	neurons:	n/a	n/a
4	POLR2A	chr4:1339619-1341579	H1-neurons	neurons:	n/a	n/a
5	CCNT2	chr4:1339785-1341470	K562	blood:	n/a	chr4:1340680-1340689 chr4:1340814-1340823 chr4:1340985-1340994
6	ZBTB7A	chr4:1339579-1341606	ECC-1	luminal epithelium:	n/a	chr4:1341045-1341056 chr4:1340984-1340991
7	EP300	chr4:1340018-1340138	GM12878	blood:	n/a	n/a
8	TCF12	chr4:1339625-1341010	ECC-1	luminal epithelium:	n/a	n/a
9	TAF1	chr4:1340065-1341583	HepG2	liver:	n/a	n/a
10	HDAC2	chr4:1339956-1340254	K562	blood:	n/a	n/a
11	MAX	chr4:1339958-1341790	ECC-1	luminal epithelium:	n/a	chr4:1340648-1340658 chr4:1341316-1341326 chr4:1340801-1340816 chr4:1340802-1340813 chr4:1340802-1340812 chr4:1340803-1340812 chr4:1340802-1340813
12	SIN3A	chr4:1339817-1341720	GM12878	blood:	n/a	chr4:1339889-1339898 chr4:1340644-1340655
13	POLR2A	chr4:1339722-1341793	HUVEC	blood vessel:	n/a	n/a
14	MXI1	chr4:1339626-1341709	HepG2	liver:	n/a	n/a
15	RUNX3	chr4:1340073-1340302	GM12878	blood:	n/a	n/a
16	HMGN3	chr4:1339728-1341417	K562	blood:	n/a	n/a
17	TBL1XR1	chr4:1339710-1340207	K562	blood:	n/a	n/a
18	MAX	chr4:1340006-1341667	H1-hESC	embryonic stem cell:	n/a	chr4:1340648-1340658 chr4:1341316-1341326 chr4:1340801-1340816 chr4:1340802-1340813 chr4:1340802-1340812 chr4:1340803-1340812 chr4:1340802-1340813
19	POLR2A	chr4:1340106-1341678	MCF-7	breast:	n/a	n/a
20	POLR2A	chr4:1339688-1341666	ECC-1	luminal epithelium:	n/a	n/a
21	CBX3	chr4:1340078-1340360	K562	blood:	n/a	n/a
22	MXI1	chr4:1339461-1341919	IMR90	lung:	n/a	n/a
23	MAX	chr4:1339590-1341748	A549	lung:	n/a	chr4:1340648-1340658 chr4:1341316-1341326 chr4:1340801-1340816 chr4:1340802-1340813 chr4:1340802-1340812 chr4:1340803-1340812 chr4:1340802-1340813
24	E2F6	chr4:1340052-1341632	K562	blood:	n/a	chr4:1340755-1340764 chr4:1340814-1340823
25	TAF1	chr4:1340049-1341518	HepG2	liver:	n/a	n/a
26	HCFC1	chr4:1339473-1341818	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr4:1340076-1341581	A549	lung:	n/a	n/a
28	BACH1	chr4:1340021-1340191	K562	blood:	n/a	n/a
29	POLR2A	chr4:1339875-1341681	GM18526	blood:	n/a	n/a
30	MXI1	chr4:1339653-1341739	GM12878	blood:	n/a	n/a
31	IRF1	chr4:1339801-1341775	K562	blood:	n/a	chr4:1340813-1340827 chr4:1340783-1340792 chr4:1341551-1341571 chr4:1341669-1341686 chr4:1340927-1340936 chr4:1340984-1340998
32	HEY1	chr4:1340029-1340576	K562	blood:	n/a	n/a
33	POLR2A	chr4:1340098-1341736	GM12892	blood:	n/a	n/a
34	MAZ	chr4:1339659-1341710	K562	blood:	n/a	chr4:1340648-1340658 chr4:1341316-1341326 chr4:1340801-1340816 chr4:1340802-1340813 chr4:1340802-1340812 chr4:1340803-1340812 chr4:1340802-1340813
35	MTA3	chr4:1339549-1340516	GM12878	blood:	n/a	n/a
36	POLR2A	chr4:1339571-1341708	SK-N-MC	brain:	n/a	n/a
37	ZBTB7A	chr4:1339949-1341527	ECC-1	luminal epithelium:	n/a	chr4:1341045-1341056 chr4:1340984-1340991
38	POLR2A	chr4:1340046-1341680	GM12878	blood:	n/a	n/a
39	MAX	chr4:1339705-1341780	K562	blood:	n/a	chr4:1340648-1340658 chr4:1341316-1341326 chr4:1340801-1340816 chr4:1340802-1340813 chr4:1340802-1340812 chr4:1340803-1340812 chr4:1340802-1340813
40	E2F6	chr4:1339999-1341631	H1-hESC	embryonic stem cell:	n/a	chr4:1340755-1340764 chr4:1340814-1340823
41	YY1	chr4:1340032-1341632	K562	blood:	n/a	chr4:1340814-1340823 chr4:1340757-1340771 chr4:1340678-1340689 chr4:1341202-1341216
42	POLR2A	chr4:1339958-1341684	ProgFib	skin:	n/a	n/a
43	MYC	chr4:1339605-1341754	NB4	blood:	n/a	chr4:1340648-1340658 chr4:1341316-1341326 chr4:1340801-1340816 chr4:1340802-1340813 chr4:1340802-1340812 chr4:1340803-1340812 chr4:1340802-1340813
44	ELF1	chr4:1339661-1341699	GM12878	blood:	n/a	chr4:1340140-1340152 chr4:1340399-1340411 chr4:1341037-1341046
45	SP1	chr4:1340089-1341719	HCT-116	colon:	n/a	chr4:1340813-1340825 chr4:1340981-1340995 chr4:1341466-1341487 chr4:1340986-1340995 chr4:1340984-1340996 chr4:1340810-1340824 chr4:1340985-1340995 chr4:1340099-1340108 chr4:1340813-1340825 chr4:1340531-1340544 chr4:1340985-1340994 chr4:1340985-1340995 chr4:1340815-1340824 chr4:1340625-1340632 chr4:1340814-1340824 chr4:1340984-1340996 chr4:1340815-1340824 chr4:1340814-1340823 chr4:1340680-1340689 chr4:1340986-1340995 chr4:1340814-1340824 chr4:1340678-1340689
46	POLR2A	chr4:1340092-1340795	K562	blood:	n/a	n/a
47	JUN	chr4:1339390-1341877	K562	blood:	n/a	n/a
48	GABPA	chr4:1340070-1341625	K562	blood:	n/a	chr4:1340751-1340765 chr4:1340754-1340765 chr4:1340814-1340823 chr4:1341080-1341089
49	POLR2A	chr4:1339676-1341884	K562	blood:	n/a	n/a
50	MAZ	chr4:1339511-1341890	IMR90	lung:	n/a	chr4:1340648-1340658 chr4:1341316-1341326 chr4:1340801-1340816 chr4:1340802-1340813 chr4:1340802-1340812 chr4:1340803-1340812 chr4:1340802-1340813

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:1340084-1340134	MCF-7	breast:	n/a
2	chr4:1340084-1340134	HPAEpiC	pulmonary alveolar:	n/a
3	chr4:1340084-1340134	SKMC	muscle:	n/a
4	chr4:1340084-1340134	NB4	blood:	n/a
5	chr4:1340084-1340134	HCM	heart:	n/a
6	chr4:1340084-1340134	NT2-D1	testis:	n/a
7	chr4:1340084-1340134	IMR90	lung:	fetal
8	chr4:1340084-1340134	HepG2	liver:	n/a
9	chr4:1340084-1340134	GM06990	blood:	n/a
10	chr4:1340084-1340134	HRE	kidney:	n/a
11	chr4:1340084-1340134	BJ	skin:	n/a
12	chr4:1340084-1340134	AoSMC	blood vessel:	n/a
13	chr4:1340084-1340134	HL-60	blood:	n/a
14	chr4:1340084-1340134	PFSK-1	brain:	n/a
15	chr4:1340084-1340134	SK-N-SH	brain:	n/a
16	chr4:1340084-1340134	K562	blood:	n/a
17	chr4:1340084-1340134	HIPEpiC	eye:	n/a
18	chr4:1340084-1340134	ECC-1	luminal epithelium:	n/a
19	chr4:1340084-1340134	AG04450	lung:	fetal
20	chr4:1340084-1340134	T-47D	breast:	n/a
21	chr4:1340084-1340134	HCT-116	colon:	n/a
22	chr4:1340084-1340134	AG09319	gingival:	n/a
23	chr4:1340084-1340134	Jurkat	blood:	n/a
24	chr4:1340084-1340134	PANC-1	pancreas:	n/a
25	chr4:1340084-1340134	HNPCEpiC	eye:	n/a
26	chr4:1340084-1340134	H1-hESC	embryonic stem cell:	embryo
27	chr4:1340084-1340134	LNCaP	prostate:	n/a
28	chr4:1340084-1340134	A549	lung:	n/a
29	chr4:1340084-1340134	SK-N-SH_RA	brain:	n/a
30	chr4:1340084-1340134	MCF10A-Er-Src	breast:	n/a
31	chr4:1340084-1340134	Hela-S3	cervix:	n/a
32	chr4:1340084-1340134	ProgFib	skin:	n/a
33	chr4:1340084-1340134	GM12878	blood:	n/a
34	chr4:1340084-1340134	GM12891	blood:	n/a
35	chr4:1340084-1340134	AG10803	skin:	n/a
36	chr4:1340084-1340134	HRPEpiC	eye:	n/a
37	chr4:1340084-1340134	HEK293	kidney:	embryo
38	chr4:1340084-1340134	NHBE	bronchial:	n/a
39	chr4:1340084-1340134	NH-A	brain:	n/a
40	chr4:1340084-1340134	Caco-2	colon:	n/a
41	chr4:1340084-1340134	AG04449	skin:	fetal
42	chr4:1340084-1340134	HEEpiC	esophagus:	n/a
43	chr4:1340084-1340134	HCPEpiC	choroid plexus:	n/a
44	chr4:1340084-1340134	NHDF-neo	bronchial:	n/a
45	chr4:1340084-1340134	HAEpiC	amniotic membrane:	n/a
46	chr4:1340084-1340134	HCF	heart:	n/a
47	chr4:1340084-1340134	Hepatocyte	liver:	n/a
48	chr4:1340084-1340134	CMK	blood:	n/a
49	chr4:1340084-1340134	U87	brain:	n/a
50	chr4:1340084-1340134	HUVEC	blood vessel:	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:1295898..1297425-chr4:1338423..1340843,2	MCF-7	breast:
2	chr4:1338699..1344021-chr4:1351274..1357737,7	MCF-7	breast:
3	chr4:1339666..1341352-chr4:1711949..1713755,2	K562	blood:
4	chr4:1236808..1249320-chr4:1336333..1343819,66	MCF-7	breast:
5	chr4:1242855..1243623-chr4:1340043..1341052,3	MCF-7	breast:
6	chr4:1242111..1242677-chr4:1339960..1340721,2	MCF-7	breast:
7	chr4:1338673..1343611-chr4:1344125..1350325,16	MCF-7	breast:
8	chr4:1282437..1287650-chr4:1338224..1344043,13	MCF-7	breast:
9	chr4:1292718..1295595-chr4:1336898..1340190,3	MCF-7	breast:
10	chr4:1323033..1328941-chr4:1337055..1342245,8	MCF-7	breast:
11	chr4:1242623..1243687-chr4:1339944..1341149,3	MCF-7	breast:
12	chr4:1339838..1340828-chr4:53525211..53525918,2	Hela-S3	cervix:
13	chr4:1242535..1243295-chr4:1339796..1341533,6	NB4	blood:
14	chr4:1339011..1342367-chr4:1367715..1370691,3	MCF-7	breast:
15	chr4:1280807..1287593-chr4:1339102..1342185,6	K562	blood:
16	chr4:679728..681770-chr4:1339441..1342302,2	K562	blood:
17	chr4:1336558..1338149-chr4:1338227..1340765,3	MCF-7	breast:
18	chr4:1280840..1286312-chr4:1338111..1343712,9	K562	blood:
19	chr4:1240883..1245378-chr4:1339091..1342291,13	K562	blood:
20	chr4:1339117..1341001-chr4:1581105..1584040,2	K562	blood:
21	chr4:1235141..1249133-chr4:1336906..1347308,118	MCF-7	breast:
22	chr4:1242323..1243215-chr4:1340043..1340735,2	Hela-S3	cervix:
23	chr4:1339048..1342461-chr4:1794240..1796574,3	MCF-7	breast:
24	chr4:1280977..1287340-chr4:1335495..1344055,33	MCF-7	breast:
25	chr4:1313002..1315500-chr4:1338426..1340938,2	MCF-7	breast:
26	chr4:1339661..1343694-chr4:1344237..1349254,11	K562	blood:
27	chr4:1188846..1191354-chr4:1337880..1340557,2	MCF-7	breast:
28	chr4:984860..987749-chr4:1337412..1341360,3	MCF-7	breast:
29	chr4:1339729..1343240-chr4:1359477..1362445,4	MCF-7	breast:
30	chr4:1239502..1245378-chr4:1336996..1344860,21	K562	blood:
31	chr4:1289122..1291329-chr4:1338444..1340407,2	MCF-7	breast:

Variant related genes	Relation type
UVSSA	TF binding region
UVSSA	CpG island
ENSG00000159674	Chromatin interaction
ENSG00000196810	Chromatin interaction
ENSG00000163945	Chromatin interaction
ENSG00000127415	Chromatin interaction
ENSG00000109189	Chromatin interaction
ENSG00000253399	Chromatin interaction
ENSG00000145217	Chromatin interaction
ENSG00000244459	Chromatin interaction
ENSG00000159692	Chromatin interaction
ENSG00000090316	Chromatin interaction
ENSG00000169026	Chromatin interaction
ENSG00000068078	Chromatin interaction
ENSG00000163950	Chromatin interaction
ENSG00000248866	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	esv3339080	chr4:970630-1546223	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv878328	chr4:1141573-1990425	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
5	nsv878330	chr4:1147407-1523930	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
6	nsv461152	chr4:1159680-1415698	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	nsv593278	chr4:1159680-1415698	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
8	nsv997971	chr4:1191256-1518521	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
9	nsv461155	chr4:1203265-1352685	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
10	nsv593281	chr4:1203265-1352685	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
11	nsv593298	chr4:1244267-1342521	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
12	nsv878338	chr4:1277826-1358449	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
13	nsv878339	chr4:1277826-1363886	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
14	nsv878340	chr4:1277826-1386570	Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
15	nsv878341	chr4:1277826-1391400	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
16	nsv1002635	chr4:1282603-1402761	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
17	nsv878342	chr4:1291337-1363886	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
18	nsv878343	chr4:1291337-1391400	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
19	nsv878344	chr4:1291337-1414684	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
20	nsv878345	chr4:1291337-1563920	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
21	nsv461157	chr4:1300077-1352685	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
22	nsv593301	chr4:1300077-1352685	Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
23	nsv878346	chr4:1300077-1363886	Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
24	nsv878347	chr4:1300077-1866358	Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
25	nsv878348	chr4:1305269-1386570	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
26	esv1794294	chr4:1307119-1817474	Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
27	nsv878349	chr4:1318132-1363886	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
28	nsv878350	chr4:1320023-1500753	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
29	nsv932661	chr4:1324751-1364014	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
30	nsv878351	chr4:1329847-1414684	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
31	nsv878352	chr4:1334721-1363886	Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
32	nsv1008785	chr4:1335089-1518521	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
33	nsv536988	chr4:1335089-1518521	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
34	nsv593302	chr4:1338618-1414684	ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
35	esv3345580	chr4:1339177-1341725	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
36	esv3411134	chr4:1339777-1342325	Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:1338800-1342400	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr4:1339000-1341600	Active TSS	Osteobl	bone
3	chr4:1339000-1341800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:1339000-1342000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:1339000-1342000	Active TSS	HSMM	muscle
6	chr4:1339200-1341400	Active TSS	HMEC	breast
7	chr4:1339200-1341400	Active TSS	NH-A	brain
8	chr4:1339200-1341600	Active TSS	Muscle Satellite Cultured Cells	--
9	chr4:1339200-1342000	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr4:1339400-1340200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr4:1339400-1340200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr4:1339400-1340200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:1339400-1340200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:1339400-1340200	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr4:1339400-1340200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr4:1339400-1340400	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr4:1339400-1341400	Active TSS	Primary T cells from cord blood	blood
18	chr4:1339400-1341400	Active TSS	HepG2	liver
19	chr4:1339400-1341600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:1339400-1341600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:1339400-1341600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:1339400-1341600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:1339400-1341600	Active TSS	Colon Smooth Muscle	Colon
24	chr4:1339400-1341600	Active TSS	Fetal Intestine Large	intestine
25	chr4:1339400-1341600	Active TSS	Fetal Kidney	kidney
26	chr4:1339400-1341600	Active TSS	Rectal Smooth Muscle	rectum
27	chr4:1339400-1341600	Active TSS	Thymus	Thymus
28	chr4:1339400-1341600	Active TSS	NHDF-Ad	bronchial
29	chr4:1339400-1341600	Active TSS	NHEK	skin
30	chr4:1339400-1341800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:1339400-1341800	Active TSS	Aorta	Aorta
32	chr4:1339400-1341800	Active TSS	Brain Hippocampus Middle	brain
33	chr4:1339400-1341800	Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr4:1339400-1341800	Active TSS	Esophagus	oesophagus
35	chr4:1339400-1341800	Active TSS	A549	lung
36	chr4:1339400-1341800	Active TSS	HSMMtube	muscle
37	chr4:1339400-1341800	Active TSS	NHLF	lung
38	chr4:1339400-1342000	Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr4:1339400-1342000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
40	chr4:1339400-1342000	Active TSS	H1 Cell Line	embryonic stem cell
41	chr4:1339400-1342000	Active TSS	H9 Cell Line	embryonic stem cell
42	chr4:1339400-1342000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr4:1339400-1342200	Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr4:1339400-1342200	Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr4:1339400-1342200	Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr4:1339400-1342400	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr4:1339400-1342400	Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr4:1339400-1342800	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr4:1339600-1340200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr4:1339600-1340200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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