Variant report

Variant	rs573740
Chromosome Location	chr15:54683431-54683432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11629500	0.82[JPT][hapmap]
rs472203	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs487588	0.87[CEU][hapmap]
rs498529	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs522021	0.87[CEU][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs524349	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs562918	0.92[JPT][hapmap]
rs563881	0.91[CEU][hapmap];0.92[GIH][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs564119	0.87[CEU][hapmap]
rs572288	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6493676	0.85[CEU][hapmap];0.85[GIH][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs8031781	0.85[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54680200-54690200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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