Variant report

Variant	rs573756432
Chromosome Location	chr5:145106875-145106876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv969001	chr5:145097474-145111251	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1021851	chr5:145106686-145187560	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3396050	chr5:145106716-145109580	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145101600-145117400	Weak transcription	Gastric	stomach
2	chr5:145102200-145107600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:145105200-145111200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:145105400-145179000	Weak transcription	Pancreas	Pancrea
5	chr5:145106000-145107800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
6	chr5:145106000-145109800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:145106000-145111400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
8	chr5:145106200-145107200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
9	chr5:145106200-145107600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr5:145106200-145107800	ZNF genes & repeats	Ovary	ovary
11	chr5:145106200-145110000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr5:145106200-145111400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr5:145106200-145114000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:145106400-145107000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:145106400-145107400	ZNF genes & repeats	Fetal Intestine Small	intestine
16	chr5:145106600-145107000	ZNF genes & repeats	Fetal Stomach	stomach
17	chr5:145106600-145107200	ZNF genes & repeats	Aorta	Aorta
18	chr5:145106600-145110600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr5:145106800-145108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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