Variant report

Variant	rs573761901
Chromosome Location	chr3:154796440-154796441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:154796309-154799404	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr3:154796370-154798315	Raji	blood:	n/a	n/a
3	POLR2A	chr3:154795817-154801378	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:154794372..154796771-chr3:154800533..154803148,2	MCF-7	breast:
2	chr3:154788960..154792081-chr3:154794108..154796605,3	MCF-7	breast:

Variant related genes	Relation type
MME	TF binding region
ENSG00000196549	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868930	chr3:154076125-154820242	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1000140	chr3:154336261-154905740	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534289	chr3:154535584-154987166	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv532663	chr3:154561578-154960353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv963491	chr3:154795648-154803797	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154789000-154796600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:154789200-154797400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:154789600-154796600	Weak transcription	HSMMtube	muscle
4	chr3:154795000-154796600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:154795200-154796600	Weak transcription	K562	blood
6	chr3:154795800-154796600	Bivalent Enhancer	Fetal Brain Male	brain
7	chr3:154796000-154796600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:154796000-154796800	Flanking Active TSS	NHDF-Ad	bronchial
9	chr3:154796000-154802200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:154796200-154799600	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr3:154796200-154799600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:154796400-154796600	Active TSS	H1 Cell Line	embryonic stem cell
13	chr3:154796400-154796600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
14	chr3:154796400-154796600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
15	chr3:154796400-154796600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:154796400-154796600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr3:154796400-154796600	Active TSS	Primary B cells from cord blood	blood
18	chr3:154796400-154796600	Active TSS	Primary hematopoietic stem cells	blood
19	chr3:154796400-154796600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr3:154796400-154796600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:154796400-154796600	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:154796400-154796600	Active TSS	Adipose Nuclei	Adipose
23	chr3:154796400-154796600	Flanking Bivalent TSS/Enh	Fetal Lung	lung
24	chr3:154796400-154796600	Enhancers	HMEC	breast
25	chr3:154796400-154796600	Enhancers	HSMM	muscle
26	chr3:154796400-154796600	Enhancers	HUVEC	blood vessel
27	chr3:154796400-154796800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
28	chr3:154796400-154796800	Active TSS	Brain Anterior Caudate	brain
29	chr3:154796400-154796800	Flanking Active TSS	Fetal Kidney	kidney
30	chr3:154796400-154797000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
31	chr3:154796400-154797000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
32	chr3:154796400-154797200	Flanking Active TSS	Dnd41	blood
33	chr3:154796400-154797200	Flanking Active TSS	Osteobl	bone
34	chr3:154796400-154799000	Active TSS	Placenta Amnion	Placenta Amnion
35	chr3:154796400-154799200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
36	chr3:154796400-154800000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:154796400-154800000	Active TSS	NHLF	lung

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