Variant report

Variant	rs573765902
Chromosome Location	chr7:62809629-62809630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:62809620-62809670	AG04450	lung:	fetal
2	chr7:62809620-62809670	BJ	skin:	n/a
3	chr7:62809620-62809670	PANC-1	pancreas:	n/a
4	chr7:62809620-62809670	H1-hESC	embryonic stem cell:	embryo
5	chr7:62809620-62809670	HPAEpiC	pulmonary alveolar:	n/a
6	chr7:62809620-62809670	HCF	heart:	n/a
7	chr7:62809620-62809670	PFSK-1	brain:	n/a
8	chr7:62809620-62809670	MCF-7	breast:	n/a
9	chr7:62809620-62809670	HNPCEpiC	eye:	n/a
10	chr7:62809620-62809670	RPTEC	kidney:	n/a
11	chr7:62809620-62809670	SAEC	small airway:	n/a
12	chr7:62809620-62809670	AoSMC	blood vessel:	n/a
13	chr7:62809620-62809670	Hepatocyte	liver:	n/a
14	chr7:62809620-62809670	HMEC	breast:	n/a
15	chr7:62809620-62809670	CMK	blood:	n/a
16	chr7:62809620-62809670	SK-N-SH	brain:	n/a
17	chr7:62809620-62809670	SK-N-SH_RA	brain:	n/a
18	chr7:62809620-62809670	SKMC	muscle:	n/a
19	chr7:62809620-62809670	HCM	heart:	n/a
20	chr7:62809620-62809670	HRE	kidney:	n/a
21	chr7:62809620-62809670	MCF10A-Er-Src	breast:	n/a
22	chr7:62809620-62809670	HEEpiC	esophagus:	n/a
23	chr7:62809620-62809670	ECC-1	luminal epithelium:	n/a
24	chr7:62809620-62809670	HRCEpiC	kidney:	n/a
25	chr7:62809620-62809670	A549	lung:	n/a
26	chr7:62809620-62809670	T-47D	breast:	n/a
27	chr7:62809620-62809670	BE2_C	brain:	n/a
28	chr7:62809620-62809670	AG04449	skin:	fetal
29	chr7:62809620-62809670	HAEpiC	amniotic membrane:	n/a
30	chr7:62809620-62809670	NT2-D1	testis:	n/a
31	chr7:62809620-62809670	K562	blood:	n/a
32	chr7:62809620-62809670	HIPEpiC	eye:	n/a
33	chr7:62809620-62809670	HEK293	kidney:	embryo
34	chr7:62809620-62809670	AG09309	skin:	n/a
35	chr7:62809620-62809670	NH-A	brain:	n/a
36	chr7:62809620-62809670	GM12891	blood:	n/a
37	chr7:62809620-62809670	SK-N-MC	brain:	n/a
38	chr7:62809620-62809670	PrEC	prostate:	n/a
39	chr7:62809620-62809670	HL-60	blood:	n/a
40	chr7:62809620-62809670	HepG2	liver:	n/a
41	chr7:62809620-62809670	AG09319	gingival:	n/a
42	chr7:62809620-62809670	HCPEpiC	choroid plexus:	n/a
43	chr7:62809620-62809670	HCT-116	colon:	n/a
44	chr7:62809620-62809670	GM06990	blood:	n/a
45	chr7:62809620-62809670	GM12892	blood:	n/a
46	chr7:62809620-62809670	NHBE	bronchial:	n/a
47	chr7:62809620-62809670	GM12878	blood:	n/a
48	chr7:62809620-62809670	NB4	blood:	n/a
49	chr7:62809620-62809670	Jurkat	blood:	n/a
50	chr7:62809620-62809670	Hela-S3	cervix:	n/a

No data

Variant related genes	Relation type
ENSG00000227923	CpG island

Extended variants
information (count: 32 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888187	chr7:61976744-62881775	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv1026246	chr7:61987161-62984310	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv470244	chr7:62012220-62838532	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv533415	chr7:62030665-62985503	ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv917772	chr7:62181098-62909513	ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
6	nsv533258	chr7:62196742-62828654	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv888219	chr7:62353275-62944123	ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
8	nsv1034152	chr7:62360153-62842300	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv1015861	chr7:62365180-62879551	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
10	nsv888220	chr7:62438289-62845649	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv915809	chr7:62452971-62830937	Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv870198	chr7:62453030-62828595	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	nsv1025153	chr7:62453154-62833972	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
14	nsv1020946	chr7:62465974-62833782	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
15	nsv538880	chr7:62465974-62833782	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
16	nsv1027926	chr7:62466174-62833643	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
17	nsv538887	chr7:62466174-62833643	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	esv3478284	chr7:62531504-63351786	ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription	TF binding region CpG island lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
19	esv3478287	chr7:62531504-63351786	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
20	nsv1016970	chr7:62619341-62849388	Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	19 gene(s)	inside rSNPs	diseases
21	nsv1020393	chr7:62619341-62984310	ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	30 gene(s)	inside rSNPs	diseases
22	nsv1023293	chr7:62619341-63109895	ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
23	nsv607300	chr7:62622297-62895725	ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	25 gene(s)	inside rSNPs	diseases
24	nsv1016602	chr7:62623431-63339807	ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
25	nsv966811	chr7:62672584-62827826	ZNF genes & repeats	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
26	nsv888230	chr7:62705018-63294907	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
27	nsv528613	chr7:62735470-62935337	ZNF genes & repeats	TF binding region CpG island lncRNA	20 gene(s)	inside rSNPs	diseases
28	nsv888233	chr7:62761336-62955063	ZNF genes & repeats	TF binding region CpG island lncRNA	22 gene(s)	inside rSNPs	diseases
29	nsv888234	chr7:62779097-62847852	ZNF genes & repeats	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
30	nsv888235	chr7:62803799-62944123	ZNF genes & repeats	TF binding region CpG island lncRNA	19 gene(s)	inside rSNPs	diseases
31	esv3356893	chr7:62809142-62811690	Inactive region	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
32	nsv8105	chr7:62809586-62811103	Inactive region	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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