Variant report

Variant	rs573780940
Chromosome Location	chr9:99723364-99723365
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053215	chr9:99483926-99824810	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv520001	chr9:99533434-99795125	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831661	chr9:99611968-99800592	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv893606	chr9:99659608-99795125	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv972789	chr9:99704335-99774677	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99659600-99730000	Weak transcription	Gastric	stomach
2	chr9:99659600-99738400	Weak transcription	Spleen	Spleen
3	chr9:99660200-99730000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:99677600-99737400	Weak transcription	Left Ventricle	heart
5	chr9:99681200-99740800	Weak transcription	Lung	lung
6	chr9:99688200-99729000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:99689600-99733000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:99691600-99730000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:99694200-99728400	Weak transcription	NHEK	skin
10	chr9:99696200-99730000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:99697000-99733000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:99701600-99730000	Weak transcription	Pancreas	Pancrea
13	chr9:99702400-99736400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:99702800-99729600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:99702800-99735200	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:99702800-99736200	Weak transcription	Fetal Intestine Large	intestine
17	chr9:99703000-99730200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:99703000-99736000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr9:99703400-99732000	Weak transcription	Liver	Liver
20	chr9:99703600-99730200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:99703600-99731400	Weak transcription	A549	lung
22	chr9:99703800-99726400	Weak transcription	Fetal Lung	lung
23	chr9:99703800-99732000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:99703800-99734200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr9:99704400-99736400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr9:99705600-99725600	Weak transcription	Osteobl	bone
27	chr9:99706000-99728200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:99706000-99735800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr9:99706800-99735400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr9:99707200-99744000	Weak transcription	Fetal Thymus	thymus
31	chr9:99707400-99736400	Weak transcription	Primary T cells from cord blood	blood
32	chr9:99707600-99734200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:99707800-99726800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr9:99709200-99734400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:99709200-99740800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr9:99709400-99735400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr9:99709400-99736400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr9:99709400-99739400	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr9:99709600-99724200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr9:99709600-99728400	Weak transcription	Adipose Nuclei	Adipose
41	chr9:99711400-99732800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:99711400-99734600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr9:99711400-99735000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr9:99711600-99736400	Weak transcription	Primary B cells from peripheral blood	blood
45	chr9:99711600-99738400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr9:99711800-99726600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr9:99711800-99727000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr9:99711800-99735600	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr9:99712000-99735600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr9:99713800-99732600	Weak transcription	Muscle Satellite Cultured Cells	--

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