Variant report

Variant	rs57378146
Chromosome Location	chr1:73381634-73381635
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013549	chr1:73209040-73408373	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3382727	chr1:73380564-73384062	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv1073712	chr1:73381633-73381634	Active TSS Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73378600-73382600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:73380200-73382000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:73381000-73382000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:73381000-73382600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:73381200-73381800	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr1:73381200-73381800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr1:73381200-73381800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:73381200-73381800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:73381400-73381800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:73381400-73381800	Enhancers	Fetal Brain Male	brain
11	chr1:73381400-73382000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:73381400-73382000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:73381600-73381800	Active TSS	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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