Variant report

Variant	rs573788710
Chromosome Location	chr6:74020479-74020480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr6:74020145-74020515	GM12878	blood:	n/a	n/a
2	SPI1	chr6:74019779-74020723	GM12878	blood:	n/a	n/a
3	SPI1	chr6:74020103-74020510	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:74019132..74021037-chr6:74035102..74038001,2	MCF-7	breast:
2	chr6:74019175..74020751-chr6:74101665..74105754,3	MCF-7	breast:

Variant related genes	Relation type
KHDC1	TF binding region
ENSG00000080007	Chromatin interaction
ENSG00000238464	Chromatin interaction
ENSG00000203907	Chromatin interaction
ENSG00000226840	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv518874	chr6:74014468-74041424	Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv966628	chr6:74020000-74034657	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74017200-74020800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:74018200-74020600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr6:74018400-74020600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:74018400-74020600	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr6:74018400-74020600	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr6:74018600-74020600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:74018600-74020600	Active TSS	Brain Germinal Matrix	brain
8	chr6:74018600-74020600	Active TSS	Fetal Brain Female	brain
9	chr6:74018800-74020600	Active TSS	Brain Angular Gyrus	brain
10	chr6:74018800-74020600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:74018800-74020600	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr6:74019000-74020600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:74019000-74020600	Active TSS	Brain Substantia Nigra	brain
14	chr6:74019000-74020600	Active TSS	Fetal Lung	lung
15	chr6:74019000-74020600	Active TSS	Ovary	ovary
16	chr6:74019200-74020600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:74019200-74020800	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr6:74019400-74020600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:74019400-74020600	Active TSS	Muscle Satellite Cultured Cells	--
20	chr6:74019600-74020600	Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr6:74019600-74020800	Active TSS	Brain Cingulate Gyrus	brain
22	chr6:74019800-74020600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:74019800-74020600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:74019800-74020600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:74019800-74020600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:74019800-74020600	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr6:74019800-74020600	Active TSS	Fetal Stomach	stomach
28	chr6:74019800-74020600	Active TSS	Pancreas	Pancrea
29	chr6:74019800-74020600	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr6:74019800-74020600	Active TSS	Stomach Smooth Muscle	stomach
31	chr6:74020000-74020600	Active TSS	Primary hematopoietic stem cells	blood
32	chr6:74020000-74020600	Active TSS	Brain Hippocampus Middle	brain
33	chr6:74020200-74020600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:74020200-74020600	Flanking Active TSS	Duodenum Mucosa	Duodenum
35	chr6:74020200-74020600	Active TSS	Fetal Muscle Trunk	muscle
36	chr6:74020400-74020600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:74020400-74020600	Flanking Active TSS	Primary B cells from cord blood	blood
38	chr6:74020400-74020600	Enhancers	Primary B cells from peripheral blood	blood
39	chr6:74020400-74020600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
40	chr6:74020400-74020600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:74020400-74020600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:74020400-74020600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr6:74020400-74020600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr6:74020400-74020600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr6:74020400-74020600	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr6:74020400-74020600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:74020400-74020600	Active TSS	Adipose Nuclei	Adipose
48	chr6:74020400-74020600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
49	chr6:74020400-74020600	Bivalent Enhancer	Fetal Intestine Large	intestine
50	chr6:74020400-74020600	Flanking Active TSS	Fetal Kidney	kidney

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