Variant report

Variant	rs57379044
Chromosome Location	chr8:120076242-120076243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10505352	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10955918	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10955920	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10955921	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12056401	0.84[ASN][1000 genomes]
rs12056749	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12677367	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12678216	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12679567	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12681528	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1385507	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1385508	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1485311	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16891854	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16891856	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16891859	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16891861	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16891864	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16891869	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16891872	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16891875	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16891907	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16891911	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16891913	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16891914	0.84[ASN][1000 genomes]
rs16891916	0.84[ASN][1000 genomes]
rs17758330	0.87[EUR][1000 genomes]
rs3812490	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3924060	0.87[EUR][1000 genomes]
rs4437685	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4565488	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56862071	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57733873	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58732819	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59437722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59943296	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60012832	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60335297	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60360696	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60727179	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61364754	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61605021	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61679139	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61706918	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73709526	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs923100	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758169	chr8:119943309-120275750	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2759639	chr8:119943309-120275750	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1831977	chr8:120071144-120076264	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120075200-120076400	Enhancers	Fetal Lung	lung
2	chr8:120075200-120077200	Enhancers	Hela-S3	cervix
3	chr8:120075800-120078200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:120076200-120079800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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