Variant report

Variant	rs573802826
Chromosome Location	chr6:147829329-147829330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:147829180-147829330	GM12874	blood:	n/a	n/a
2	CTCF	chr6:147829320-147829470	NHEK	skin:	n/a	chr6:147829346-147829359
3	POLR2A	chr6:147829300-147829997	HUVEC	blood vessel:	n/a	n/a
4	CTCF	chr6:147829220-147829370	GM12865	blood:	n/a	chr6:147829346-147829359
5	CTCF	chr6:147829240-147829390	HRPEpiC	eye:	n/a	chr6:147829346-147829359
6	POLR2A	chr6:147829067-147830129	HUVEC	blood vessel:	n/a	n/a
7	RAD21	chr6:147829116-147829982	IMR90	lung:	n/a	chr6:147829590-147829604
8	CTBP2	chr6:147829088-147830660	H1-hESC	embryonic stem cell:	n/a	n/a
9	UBTF	chr6:147829264-147829843	K562	blood:	n/a	n/a
10	CTCF	chr6:147829280-147829430	NHDF-neo	bronchial:	n/a	chr6:147829346-147829359
11	CTCF	chr6:147829220-147829370	AoAF	blood vessel:	n/a	chr6:147829346-147829359
12	CTCF	chr6:147829280-147829430	BJ	skin:	n/a	chr6:147829346-147829359
13	POLR2A	chr6:147828306-147830686	H1-neurons	neurons:	n/a	n/a
14	CTCF	chr6:147829220-147829370	HMF	breast:	n/a	chr6:147829346-147829359
15	HDAC2	chr6:147829119-147829829	HepG2	liver:	n/a	n/a
16	CTCF	chr6:147829280-147829570	AG04449	skin:	n/a	chr6:147829346-147829359
17	POLR2A	chr6:147828918-147830345	H1-neurons	neurons:	n/a	n/a
18	CTCF	chr6:147829240-147829390	GM12867	blood:	n/a	chr6:147829346-147829359
19	CTCF	chr6:147829200-147829350	GM12869	blood:	n/a	n/a
20	CTCF	chr6:147829320-147829570	K562	blood:	n/a	chr6:147829346-147829359
21	UBTF	chr6:147829047-147830340	K562	blood:	n/a	n/a
22	CTCF	chr6:147829240-147829390	GM12871	blood:	n/a	chr6:147829346-147829359
23	BACH1	chr6:147828493-147829666	H1-hESC	embryonic stem cell:	n/a	n/a
24	SUZ12	chr6:147827959-147831279	H1-hESC	embryonic stem cell:	n/a	n/a
25	CTCF	chr6:147829280-147829430	AG09319	gingival:	n/a	chr6:147829346-147829359
26	ELF1	chr6:147828995-147829494	K562	blood:	n/a	chr6:147829224-147829236
27	CTCF	chr6:147829200-147829350	HEK293	kidney:	n/a	n/a
28	POLR2A	chr6:147829252-147830048	HEK293	kidney:	n/a	n/a
29	HMGN3	chr6:147829000-147829824	K562	blood:	n/a	n/a
30	TAF1	chr6:147829027-147829628	H1-neurons	neurons:	n/a	n/a
31	MAZ	chr6:147829229-147829949	K562	blood:	n/a	chr6:147829253-147829263
32	POLR2A	chr6:147829256-147829963	HUVEC	blood vessel:	n/a	n/a
33	MAX	chr6:147828978-147830269	A549	lung:	n/a	chr6:147829253-147829263
34	ZBTB7A	chr6:147828850-147829496	ECC-1	luminal epithelium:	n/a	chr6:147828914-147828922
35	POLR2A	chr6:147829019-147830108	HUVEC	blood vessel:	n/a	n/a
36	REST	chr6:147828307-147830557	H1-neurons	neurons:	n/a	chr6:147829102-147829115 chr6:147829031-147829044 chr6:147830032-147830040
37	FOXP2	chr6:147828967-147829425	PFSK-1	brain:	n/a	n/a
38	CTCF	chr6:147829280-147829430	HBMEC	blood vessel:	n/a	chr6:147829346-147829359
39	CTCF	chr6:147829260-147829410	HRE	kidney:	n/a	chr6:147829346-147829359
40	MAX	chr6:147829005-147830247	ECC-1	luminal epithelium:	n/a	chr6:147829253-147829263
41	ZBTB7A	chr6:147828815-147829381	ECC-1	luminal epithelium:	n/a	chr6:147828914-147828922
42	CTCF	chr6:147829260-147829410	GM12868	blood:	n/a	chr6:147829346-147829359
43	ZNF263	chr6:147827811-147831448	HEK293-T-REx	kidney:	n/a	n/a

Variant related genes	Relation type
SAMD5	TF binding region

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3336787	chr6:147829109-147831307	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147827800-147829600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:147827800-147829600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
3	chr6:147827800-147830200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:147827800-147830800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr6:147827800-147831800	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:147827800-147834000	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr6:147828000-147829400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:147828000-147829400	Enhancers	Fetal Heart	heart
9	chr6:147828000-147829400	Flanking Bivalent TSS/Enh	Placenta	Placenta
10	chr6:147828000-147829400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
11	chr6:147828000-147829600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
12	chr6:147828000-147829600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
13	chr6:147828000-147829600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
14	chr6:147828000-147829600	Flanking Bivalent TSS/Enh	HepG2	liver
15	chr6:147828000-147830200	Flanking Active TSS	Liver	Liver
16	chr6:147828000-147830400	Active TSS	A549	lung
17	chr6:147828000-147830800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
18	chr6:147828000-147831000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr6:147828000-147831200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr6:147828000-147831200	Active TSS	Aorta	Aorta
21	chr6:147828200-147830000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:147828200-147830000	Active TSS	Small Intestine	intestine
23	chr6:147828200-147830600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
24	chr6:147828400-147829400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:147828400-147829800	Bivalent Enhancer	Fetal Brain Male	brain
26	chr6:147828400-147830200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:147828400-147830200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:147828400-147830400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:147828400-147830400	Active TSS	Gastric	stomach
30	chr6:147828400-147831200	Active TSS	Right Atrium	heart
31	chr6:147828400-147832400	Active TSS	Fetal Kidney	kidney
32	chr6:147828600-147829400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:147828600-147829400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:147828600-147829400	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:147828600-147830200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:147828600-147830400	Active TSS	NHDF-Ad	bronchial
37	chr6:147828600-147830600	Active TSS	Fetal Lung	lung
38	chr6:147828600-147830800	Active TSS	Brain Angular Gyrus	brain
39	chr6:147828600-147831000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
40	chr6:147828600-147831600	Active TSS	HSMM	muscle
41	chr6:147828600-147832000	Active TSS	Fetal Intestine Large	intestine
42	chr6:147828600-147832000	Active TSS	Rectal Mucosa Donor 31	rectum
43	chr6:147828600-147832200	Active TSS	HSMMtube	muscle
44	chr6:147828800-147829400	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:147828800-147829400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
46	chr6:147828800-147829400	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr6:147828800-147829600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:147828800-147829600	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
49	chr6:147828800-147829600	Active TSS	Hela-S3	cervix
50	chr6:147828800-147829600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood

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