Variant report

Variant	rs573839365
Chromosome Location	chr1:217157912-217157913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468149	chr1:217134966-217203091	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv549204	chr1:217134966-217203091	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1008670	chr1:217155114-217206765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1012243	chr1:217157000-217206765	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1006155	chr1:217157000-217215465	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1004880	chr1:217157748-217206765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217156600-217158200	Enhancers	Psoas Muscle	Psoas
2	chr1:217157200-217158000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr1:217157200-217158200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:217157200-217158200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr1:217157200-217158200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:217157400-217158000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:217157400-217194400	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:217157600-217158000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:217157600-217158000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:217157600-217158000	Enhancers	Brain Anterior Caudate	brain
11	chr1:217157600-217158200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr1:217157600-217158200	Enhancers	Brain Substantia Nigra	brain
13	chr1:217157600-217158800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:217157800-217158200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr1:217157800-217158200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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