Variant report

Variant	rs573845570
Chromosome Location	chr15:41856533-41856534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:60)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:60 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:41856390-41857223	PFSK-1	brain:	n/a	n/a
2	REST	chr15:41856325-41856761	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr15:41856229-41857524	K562	blood:	n/a	n/a
4	TEAD4	chr15:41856497-41856979	K562	blood:	n/a	n/a
5	REST	chr15:41856344-41856656	SK-N-SH	brain:	n/a	n/a
6	REST	chr15:41856176-41857362	H1-neurons	neurons:	n/a	chr15:41856892-41856905 chr15:41857166-41857184 chr15:41856895-41856908
7	CTCF	chr15:41856516-41856590	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr15:41856520-41856670	BE2_C	brain:	n/a	n/a
9	CTCF	chr15:41856400-41856550	BE2_C	brain:	n/a	n/a
10	REST	chr15:41856283-41856914	PFSK-1	brain:	n/a	chr15:41856892-41856905 chr15:41856895-41856908
11	YY1	chr15:41856440-41856937	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr15:41856509-41856705	HepG2	liver:	n/a	n/a
13	RCOR1	chr15:41856515-41857065	K562	blood:	n/a	n/a
14	CTCF	chr15:41856440-41856590	HPAF	blood vessel:	n/a	n/a
15	EP300	chr15:41856532-41856873	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr15:41856460-41856610	HEK293	kidney:	n/a	n/a
17	REST	chr15:41856337-41856701	PFSK-1	brain:	n/a	n/a
18	POLR2A	chr15:41856460-41856924	H1-neurons	neurons:	n/a	n/a
19	REST	chr15:41856313-41856745	H1-hESC	embryonic stem cell:	n/a	n/a
20	ZNF143	chr15:41856029-41856883	H1-hESC	embryonic stem cell:	n/a	n/a
21	NFIC	chr15:41856432-41856812	HepG2	liver:	n/a	n/a
22	POLR2A	chr15:41856018-41856995	K562	blood:	n/a	n/a
23	ZNF263	chr15:41856255-41857053	HEK293-T-REx	kidney:	n/a	chr15:41856483-41856492
24	HDAC2	chr15:41856486-41856941	HepG2	liver:	n/a	n/a
25	CTCF	chr15:41856460-41856610	AG04450	lung:	n/a	n/a
26	REST	chr15:41856423-41856602	HepG2	liver:	n/a	n/a
27	POLR2A	chr15:41856213-41856924	H1-hESC	embryonic stem cell:	n/a	n/a
28	CTCF	chr15:41856500-41856650	SK-N-SH_RA	brain:	n/a	n/a
29	REST	chr15:41856420-41856635	PFSK-1	brain:	n/a	n/a
30	CTCF	chr15:41856500-41856650	HepG2	liver:	n/a	n/a
31	CTCF	chr15:41856480-41856630	HPAF	blood vessel:	n/a	n/a
32	POLR2A	chr15:41856429-41857237	H1-hESC	embryonic stem cell:	n/a	n/a
33	CTCF	chr15:41856480-41856630	SK-N-SH_RA	brain:	n/a	n/a
34	CTCF	chr15:41856460-41856610	HPF	lung:	n/a	n/a
35	CTCF	chr15:41856480-41856630	HCPEpiC	choroid plexus:	n/a	n/a
36	REST	chr15:41856454-41856590	K562	blood:	n/a	n/a
37	NFIC	chr15:41856347-41856889	ECC-1	luminal epithelium:	n/a	n/a
38	TEAD4	chr15:41856383-41856983	H1-hESC	embryonic stem cell:	n/a	n/a
39	CTCF	chr15:41856480-41856630	K562	blood:	n/a	n/a
40	REST	chr15:41856364-41856617	PANC-1	pancreas:	n/a	n/a
41	POLR2A	chr15:41856414-41857086	H1-neurons	neurons:	n/a	n/a
42	CHD2	chr15:41856521-41856926	HepG2	liver:	n/a	n/a
43	CTCF	chr15:41856480-41856630	HRE	kidney:	n/a	n/a
44	YY1	chr15:41856341-41856906	H1-hESC	embryonic stem cell:	n/a	n/a
45	MAZ	chr15:41856513-41857022	K562	blood:	n/a	n/a
46	REST	chr15:41856342-41856708	A549	lung:	n/a	n/a
47	REST	chr15:41856394-41856584	A549	lung:	n/a	n/a
48	POLR2A	chr15:41855023-41857639	H1-hESC	embryonic stem cell:	n/a	n/a
49	POLR2A	chr15:41856338-41857405	H1-hESC	embryonic stem cell:	n/a	n/a
50	SIN3A	chr15:41856449-41856936	H1-hESC	embryonic stem cell:	n/a	chr15:41856895-41856908

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:41856520-41856570	HCM	heart:	n/a
2	chr15:41856520-41856570	NT2-D1	testis:	n/a
3	chr15:41856520-41856570	HNPCEpiC	eye:	n/a
4	chr15:41856520-41856570	AG09319	gingival:	n/a
5	chr15:41856520-41856570	HUVEC	blood vessel:	n/a
6	chr15:41856520-41856570	NHDF-neo	bronchial:	n/a
7	chr15:41856520-41856570	PANC-1	pancreas:	n/a
8	chr15:41856520-41856570	HRE	kidney:	n/a
9	chr15:41856520-41856570	HCPEpiC	choroid plexus:	n/a
10	chr15:41856520-41856570	H1-hESC	embryonic stem cell:	embryo
11	chr15:41856520-41856570	A549	lung:	n/a
12	chr15:41856520-41856570	HCF	heart:	n/a
13	chr15:41856520-41856570	Caco-2	colon:	n/a
14	chr15:41856520-41856570	CMK	blood:	n/a
15	chr15:41856520-41856570	AG04449	skin:	fetal
16	chr15:41856520-41856570	SAEC	small airway:	n/a
17	chr15:41856520-41856570	AoSMC	blood vessel:	n/a
18	chr15:41856520-41856570	GM12891	blood:	n/a
19	chr15:41856520-41856570	GM19239	blood:	n/a
20	chr15:41856520-41856570	Hepatocyte	liver:	n/a
21	chr15:41856520-41856570	IMR90	lung:	fetal
22	chr15:41856520-41856570	HRPEpiC	eye:	n/a
23	chr15:41856520-41856570	T-47D	breast:	n/a
24	chr15:41856520-41856570	PrEC	prostate:	n/a
25	chr15:41856520-41856570	HIPEpiC	eye:	n/a
26	chr15:41856520-41856570	SK-N-MC	brain:	n/a
27	chr15:41856520-41856570	Jurkat	blood:	n/a
28	chr15:41856520-41856570	MCF10A-Er-Src	breast:	n/a
29	chr15:41856520-41856570	ovcar-3	ovarian:	n/a
30	chr15:41856520-41856570	LNCaP	prostate:	n/a
31	chr15:41856520-41856570	ECC-1	luminal epithelium:	n/a
32	chr15:41856520-41856570	GM12892	blood:	n/a
33	chr15:41856520-41856570	AG10803	skin:	n/a
34	chr15:41856520-41856570	HAEpiC	amniotic membrane:	n/a
35	chr15:41856520-41856570	HepG2	liver:	n/a
36	chr15:41856520-41856570	SKMC	muscle:	n/a
37	chr15:41856520-41856570	SK-N-SH	brain:	n/a
38	chr15:41856520-41856570	NH-A	brain:	n/a
39	chr15:41856520-41856570	NB4	blood:	n/a
40	chr15:41856520-41856570	GM06990	blood:	n/a
41	chr15:41856520-41856570	HEEpiC	esophagus:	n/a
42	chr15:41856520-41856570	MCF-7	breast:	n/a
43	chr15:41856520-41856570	HRCEpiC	kidney:	n/a
44	chr15:41856520-41856570	U87	brain:	n/a
45	chr15:41856520-41856570	HCT-116	colon:	n/a
46	chr15:41856520-41856570	PFSK-1	brain:	n/a
47	chr15:41856520-41856570	AG09309	skin:	n/a
48	chr15:41856520-41856570	GM12878	blood:	n/a
49	chr15:41856520-41856570	HL-60	blood:	n/a
50	chr15:41856520-41856570	Hela-S3	cervix:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41853373..41858542-chr15:41950830..41955637,10	K562	blood:
2	chr15:41849459..41853162-chr15:41854225..41857161,4	MCF-7	breast:
3	chr15:41853749..41856717-chr15:41950905..41954753,5	K562	blood:
4	chr15:41854411..41856736-chr15:42132704..42135389,2	K562	blood:

No data

Variant related genes	Relation type
TYRO3	TF binding region
TYRO3	CpG island
ENSG00000092445	Chromatin interaction
ENSG00000174197	Chromatin interaction
ENSG00000243708	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3359172	chr15:41856320-41857334	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41852200-41877400	Weak transcription	Aorta	Aorta
2	chr15:41852400-41859600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:41852400-41860600	Weak transcription	HUVEC	blood vessel
4	chr15:41852400-41877200	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:41852600-41856800	Enhancers	HepG2	liver
6	chr15:41852600-41858600	Weak transcription	NHDF-Ad	bronchial
7	chr15:41852600-41859600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:41852600-41877400	Weak transcription	HMEC	breast
9	chr15:41852800-41857600	Genic enhancers	Fetal Stomach	stomach
10	chr15:41852800-41877400	Weak transcription	NHEK	skin
11	chr15:41853000-41861800	Genic enhancers	Fetal Intestine Large	intestine
12	chr15:41853000-41862000	Genic enhancers	Fetal Intestine Small	intestine
13	chr15:41853200-41858200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:41853200-41860200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:41853200-41861800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr15:41853200-41863200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:41853200-41872600	Weak transcription	Hela-S3	cervix
18	chr15:41853400-41856600	Weak transcription	Right Ventricle	heart
19	chr15:41853400-41857400	Enhancers	Ovary	ovary
20	chr15:41853400-41859400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
21	chr15:41853400-41859800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:41853400-41870600	Weak transcription	Stomach Mucosa	stomach
23	chr15:41853600-41857200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:41853600-41857600	Genic enhancers	HUES48 Cell Line	embryonic stem cell
25	chr15:41853600-41859800	Genic enhancers	H1 Cell Line	embryonic stem cell
26	chr15:41853600-41860000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:41853600-41862200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr15:41853800-41861400	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:41853800-41864000	Genic enhancers	Brain Cingulate Gyrus	brain
30	chr15:41854000-41860200	Strong transcription	Dnd41	blood
31	chr15:41854000-41860800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr15:41854000-41871400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:41854200-41856600	Enhancers	H9 Cell Line	embryonic stem cell
34	chr15:41854200-41857800	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr15:41854200-41859600	Weak transcription	Pancreas	Pancrea
36	chr15:41854200-41877000	Weak transcription	Fetal Brain Male	brain
37	chr15:41854400-41857000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:41854400-41857600	Strong transcription	Fetal Brain Female	brain
39	chr15:41854600-41857200	Enhancers	Fetal Thymus	thymus
40	chr15:41854800-41857000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr15:41854800-41857400	Genic enhancers	Fetal Muscle Leg	muscle
42	chr15:41855000-41857400	Genic enhancers	Fetal Lung	lung
43	chr15:41855000-41858200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:41855000-41861400	Genic enhancers	Brain Anterior Caudate	brain
45	chr15:41855200-41857400	Enhancers	Spleen	Spleen
46	chr15:41855200-41858000	Enhancers	Fetal Kidney	kidney
47	chr15:41855200-41858000	Weak transcription	A549	lung
48	chr15:41855200-41860000	Weak transcription	Gastric	stomach
49	chr15:41855400-41856600	Weak transcription	Right Atrium	heart
50	chr15:41855400-41856800	Genic enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links