Variant report

Variant	rs573865851
Chromosome Location	chr9:97136867-97136868
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97135317..97137962-chr9:99774801..99776499,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196312	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv982323	chr9:97125305-97137721	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3409559	chr9:97135656-97138504	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97136000-97137800	Active TSS	Primary T helper cells fromperipheralblood	blood
2	chr9:97136000-97138000	Active TSS	Primary monocytes fromperipheralblood	blood
3	chr9:97136000-97138400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:97136200-97137000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr9:97136200-97137000	Active TSS	Brain Substantia Nigra	brain
6	chr9:97136200-97137800	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr9:97136200-97137800	Active TSS	Primary B cells from peripheral blood	blood
8	chr9:97136200-97137800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
9	chr9:97136200-97137800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:97136200-97137800	Active TSS	Brain Anterior Caudate	brain
11	chr9:97136200-97137800	Active TSS	Brain Hippocampus Middle	brain
12	chr9:97136200-97137800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:97136200-97137800	Active TSS	Colonic Mucosa	Colon
14	chr9:97136200-97137800	Active TSS	Placenta	Placenta
15	chr9:97136200-97137800	Active TSS	Ovary	ovary
16	chr9:97136200-97137800	Active TSS	Sigmoid Colon	Sigmoid Colon
17	chr9:97136200-97138000	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr9:97136200-97138000	Active TSS	H1 Cell Line	embryonic stem cell
19	chr9:97136200-97138000	Active TSS	H9 Cell Line	embryonic stem cell
20	chr9:97136200-97138000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:97136200-97138000	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr9:97136200-97138000	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr9:97136200-97138000	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr9:97136200-97138000	Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr9:97136200-97138000	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr9:97136200-97138000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:97136200-97138000	Active TSS	Primary B cells from cord blood	blood
28	chr9:97136200-97138000	Active TSS	Primary T cells from cord blood	blood
29	chr9:97136200-97138000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr9:97136200-97138000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr9:97136200-97138000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
32	chr9:97136200-97138000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr9:97136200-97138000	Active TSS	Adipose Nuclei	Adipose
34	chr9:97136200-97138000	Active TSS	Liver	Liver
35	chr9:97136200-97138000	Active TSS	Brain Cingulate Gyrus	brain
36	chr9:97136200-97138000	Active TSS	Brain Germinal Matrix	brain
37	chr9:97136200-97138000	Active TSS	Brain Inferior Temporal Lobe	brain
38	chr9:97136200-97138000	Active TSS	Colon Smooth Muscle	Colon
39	chr9:97136200-97138000	Active TSS	Duodenum Mucosa	Duodenum
40	chr9:97136200-97138000	Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr9:97136200-97138000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr9:97136200-97138000	Active TSS	Fetal Brain Female	brain
43	chr9:97136200-97138000	Active TSS	Fetal Intestine Large	intestine
44	chr9:97136200-97138000	Active TSS	Fetal Intestine Small	intestine
45	chr9:97136200-97138000	Active TSS	Fetal Kidney	kidney
46	chr9:97136200-97138000	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr9:97136200-97138000	Active TSS	Fetal Lung	lung
48	chr9:97136200-97138000	Active TSS	Fetal Muscle Trunk	muscle
49	chr9:97136200-97138000	Active TSS	Fetal Thymus	thymus
50	chr9:97136200-97138000	Active TSS	Psoas Muscle	Psoas

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