Variant report

Variant	rs573885709
Chromosome Location	chr9:100564805-100564806
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100553353..100555259-chr9:100563805..100566099,2	MCF-7	breast:
2	chr9:100548531..100552481-chr9:100563456..100568278,5	MCF-7	breast:
3	chr9:100476522..100478134-chr9:100564104..100567075,2	K562	blood:
4	chr9:100512323..100515740-chr9:100564209..100566797,3	MCF-7	breast:
5	chr9:100564515..100567893-chr9:100582298..100586043,4	MCF-7	breast:
6	chr9:100475511..100477601-chr9:100564696..100566585,2	MCF-7	breast:
7	chr9:100563307..100565719-chr9:100637927..100639761,2	MCF-7	breast:
8	chr9:100459437..100460978-chr9:100564253..100567153,2	MCF-7	breast:
9	chr9:100564653..100566518-chr9:100684080..100685745,2	MCF-7	breast:
10	chr9:100458238..100461123-chr9:100563334..100564904,2	MCF-7	breast:
11	chr9:100563780..100567057-chr9:100567518..100571604,5	K562	blood:
12	chr9:100552530..100555931-chr9:100564529..100567478,4	MCF-7	breast:
13	chr9:100513670..100516311-chr9:100564353..100566639,2	MCF-7	breast:
14	chr9:100554548..100556710-chr9:100564106..100565794,2	K562	blood:
15	chr9:100564087..100566855-chr9:100614362..100616413,2	MCF-7	breast:
16	chr9:100470983..100474278-chr9:100563427..100567562,3	MCF-7	breast:
17	chr9:100560448..100563206-chr9:100564370..100567117,3	MCF-7	breast:
18	chr9:100556229..100558393-chr9:100563519..100565810,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction
ENSG00000136936	Chromatin interaction
ENSG00000178919	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3338700	chr9:100564756-100567504	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100563600-100565600	Enhancers	HMEC	breast
2	chr9:100564000-100565400	Enhancers	NHEK	skin
3	chr9:100564000-100565800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:100564200-100565200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:100564200-100565400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:100564200-100565400	Enhancers	NH-A	brain
7	chr9:100564400-100565000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:100564400-100565200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:100564400-100565200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr9:100564400-100565400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:100564400-100565400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:100564400-100565600	Weak transcription	Esophagus	oesophagus
13	chr9:100564600-100565400	Enhancers	Hela-S3	cervix
14	chr9:100564600-100565800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:100564800-100565000	Enhancers	HepG2	liver
16	chr9:100564800-100565200	Enhancers	Fetal Intestine Large	intestine
17	chr9:100564800-100565200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr9:100564800-100565200	Weak transcription	Osteobl	bone
19	chr9:100564800-100565400	Weak transcription	Fetal Intestine Small	intestine
20	chr9:100564800-100565800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:100564800-100566400	Active TSS	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links