Variant report

Variant	rs57393028
Chromosome Location	chr1:155075619-155075620
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55699206	1.00[AMR][1000 genomes]
rs74116261	1.00[AMR][1000 genomes]
rs74116267	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv872454	chr1:154904840-155079477	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
3	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
4	nsv872455	chr1:155003954-155106550	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155074000-155076800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:155074400-155078800	Enhancers	Liver	Liver
3	chr1:155074400-155078800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr1:155074800-155077200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr1:155074800-155079600	Enhancers	HepG2	liver
6	chr1:155075200-155075800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:155075200-155076000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:155075200-155077200	Weak transcription	Fetal Heart	heart
9	chr1:155075200-155077200	Weak transcription	K562	blood
10	chr1:155075200-155078000	Weak transcription	Placenta	Placenta
11	chr1:155075400-155076200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr1:155075400-155077200	Weak transcription	Adipose Nuclei	Adipose
13	chr1:155075400-155077400	Weak transcription	Fetal Intestine Large	intestine
14	chr1:155075400-155078200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr1:155075400-155080000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr1:155075600-155076000	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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