Variant report

Variant	rs573939556
Chromosome Location	chr1:63261390-63261391
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:63259687..63262004-chr1:63264703..63267099,2	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830015	chr1:63261143-63455296	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63250600-63262400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr1:63250600-63266600	Weak transcription	Gastric	stomach
3	chr1:63250800-63319000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:63251000-63266600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:63251000-63269600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:63251000-63272600	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:63251000-63274800	Weak transcription	Fetal Intestine Small	intestine
8	chr1:63251000-63296000	Weak transcription	Fetal Thymus	thymus
9	chr1:63251000-63317800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:63251000-63327400	Weak transcription	Fetal Stomach	stomach
11	chr1:63251200-63327400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr1:63251400-63264800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:63251400-63275600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr1:63251800-63273000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:63252000-63266600	Weak transcription	Colon Smooth Muscle	Colon
16	chr1:63252000-63269600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:63252000-63284400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr1:63252800-63272400	Weak transcription	Primary T cells from cord blood	blood
19	chr1:63257400-63293400	Weak transcription	Brain Anterior Caudate	brain
20	chr1:63258400-63261400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr1:63259000-63263200	Enhancers	Primary B cells from peripheral blood	blood
22	chr1:63259000-63263400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr1:63259000-63263600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:63259400-63262800	Enhancers	Brain Substantia Nigra	brain
25	chr1:63259600-63261400	Enhancers	Brain Cingulate Gyrus	brain
26	chr1:63259600-63262000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:63259800-63263000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:63260200-63261600	Enhancers	Primary B cells from cord blood	blood
29	chr1:63260200-63262200	Weak transcription	GM12878-XiMat	blood
30	chr1:63260200-63273000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr1:63260800-63261400	Enhancers	Fetal Lung	lung
32	chr1:63260800-63262800	Enhancers	Primary hematopoietic stem cells	blood
33	chr1:63261000-63269400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:63261200-63261400	Enhancers	Rectal Smooth Muscle	rectum
35	chr1:63261200-63262800	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr1:63261200-63265600	Weak transcription	Brain Hippocampus Middle	brain

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