Variant report

Variant	rs573943832
Chromosome Location	chr9:94711814-94711815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr9:94710719-94713473	IMR90	lung:	n/a	chr9:94710846-94710856
2	MXI1	chr9:94710177-94713341	SK-N-SH	brain:	n/a	n/a
3	ZBTB7A	chr9:94711005-94712853	K562	blood:	n/a	n/a
4	UBTF	chr9:94710450-94712833	K562	blood:	n/a	n/a
5	POLR2A	chr9:94710760-94712921	K562	blood:	n/a	n/a
6	ZNF263	chr9:94710311-94712868	HEK293-T-REx	kidney:	n/a	chr9:94711764-94711773
7	ZBTB7A	chr9:94711630-94712146	K562	blood:	n/a	n/a
8	CCNT2	chr9:94710887-94712937	K562	blood:	n/a	chr9:94711693-94711702 chr9:94711618-94711627 chr9:94711360-94711369
9	POLR2A	chr9:94710884-94711823	K562	blood:	n/a	n/a
10	JUN	chr9:94710813-94711847	K562	blood:	n/a	chr9:94711116-94711125
11	HMGN3	chr9:94710949-94713061	K562	blood:	n/a	n/a
12	POLR2A	chr9:94710323-94711834	K562	blood:	n/a	n/a
13	UBTF	chr9:94710310-94713296	K562	blood:	n/a	n/a
14	ZBTB7A	chr9:94711387-94711835	ECC-1	luminal epithelium:	n/a	n/a
15	JUND	chr9:94711627-94711826	K562	blood:	n/a	n/a
16	RAD21	chr9:94710217-94713260	SK-N-SH	brain:	n/a	chr9:94710847-94710857 chr9:94713037-94713050 chr9:94711213-94711227
17	MAZ	chr9:94710364-94713040	K562	blood:	n/a	chr9:94710846-94710856
18	CTBP2	chr9:94710859-94712998	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ROR2	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv831653	chr9:94692454-94867542	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	nsv982625	chr9:94702344-94712887	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3359987	chr9:94710956-94713704	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94709200-94713200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:94709800-94713200	Active TSS	Fetal Kidney	kidney
3	chr9:94710000-94712800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:94710000-94712800	Active TSS	K562	blood
5	chr9:94710000-94714000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:94710200-94713000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr9:94710200-94713200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:94710200-94713200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
9	chr9:94710200-94713200	Active TSS	Colon Smooth Muscle	Colon
10	chr9:94710400-94712000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
11	chr9:94710400-94712000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
12	chr9:94710400-94712200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:94710400-94712200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:94710400-94712600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
15	chr9:94710400-94713000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:94710400-94713200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:94710400-94713200	Active TSS	Fetal Lung	lung
18	chr9:94710400-94713400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
19	chr9:94710600-94712000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
20	chr9:94710600-94712600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
21	chr9:94710600-94712800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:94710600-94712800	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr9:94710600-94712800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:94710600-94713000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr9:94710600-94713200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr9:94710600-94713200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
27	chr9:94710600-94713200	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr9:94710600-94713400	Active TSS	Ovary	ovary
29	chr9:94710800-94712000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
30	chr9:94710800-94712000	Flanking Bivalent TSS/Enh	Placenta	Placenta
31	chr9:94710800-94712200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
32	chr9:94710800-94712400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr9:94710800-94712400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr9:94710800-94712400	Bivalent/Poised TSS	Small Intestine	intestine
35	chr9:94710800-94712600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr9:94710800-94712600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr9:94710800-94712600	Bivalent/Poised TSS	Left Ventricle	heart
38	chr9:94710800-94712800	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr9:94710800-94712800	Bivalent/Poised TSS	Thymus	Thymus
40	chr9:94710800-94713000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:94710800-94713000	Active TSS	Rectal Smooth Muscle	rectum
42	chr9:94710800-94713200	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr9:94710800-94713200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:94710800-94713200	Bivalent/Poised TSS	A549	lung
45	chr9:94710800-94713400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
46	chr9:94710800-94713400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
47	chr9:94711000-94712000	Bivalent/Poised TSS	Esophagus	oesophagus
48	chr9:94711000-94712200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
49	chr9:94711000-94712600	Active TSS	Sigmoid Colon	Sigmoid Colon
50	chr9:94711000-94712800	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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